fix(graphify): exclude yaml config files and package directories from graph extraction, update knowledge graph

Author: Tcode-Motion

.graphifyignore

@@ -13,3 +13,13 @@ graphify-out/
 *.log
 .DS_Store
 Thumbs.db
+
+# Exclude packaging and extension folders
+editors/
+python-installer/
+python-installer-lang/
+design/
+*.vsix
+mkdocs.yml
+*.yml
+*.yaml

graphify-out/GRAPH_REPORT.md

@@ -4,12 +4,12 @@
 - cluster-only mode — file stats not available
 
 ## Summary
-- 131 nodes · 297 edges · 13 communities (10 shown, 3 thin omitted)
+- 25 nodes · 95 edges · 4 communities (3 shown, 1 thin omitted)
 - Extraction: 100% EXTRACTED · 0% INFERRED · 0% AMBIGUOUS
 - Token cost: 0 input · 0 output
 
 ## Graph Freshness
-- Built from commit: `89f884a7`
+- Built from commit: `b3cdaaec`
 - Run `git rev-parse HEAD` and compare to check if the graph is stale.
 - Run `graphify update .` after code changes (no API cost).
 
@@ -18,95 +18,61 @@
 - [[_COMMUNITY_Community 1|Community 1]]
 - [[_COMMUNITY_Community 2|Community 2]]
 - [[_COMMUNITY_Community 3|Community 3]]
-- [[_COMMUNITY_Community 4|Community 4]]
-- [[_COMMUNITY_Community 5|Community 5]]
-- [[_COMMUNITY_Community 6|Community 6]]
-- [[_COMMUNITY_Community 7|Community 7]]
-- [[_COMMUNITY_Community 8|Community 8]]
-- [[_COMMUNITY_Community 9|Community 9]]
-- [[_COMMUNITY_Community 10|Community 10]]
-- [[_COMMUNITY_Community 11|Community 11]]
 
 ## God Nodes (most connected - your core abstractions)
 1. `techscript_cli` - 19 edges
 2. `techscript_common` - 18 edges
 3. `techscript_syntax` - 16 edges
 4. `techscript_ast` - 15 edges
-5. `StdlibRegistry` - 13 edges
-6. `Parser<'a>` - 12 edges
-7. `DiagnosticReporter` - 12 edges
-8. `ParseResult` - 12 edges
-9. `techscript_errors` - 12 edges
-10. `StdlibModule` - 10 edges
+5. `techscript_errors` - 12 edges
+6. `techscript_interpreter` - 10 edges
+7. `techscript_ir` - 10 edges
+8. `techscript_semantic` - 10 edges
+9. `techscript_vm` - 9 edges
+10. `techscript_runtime` - 8 edges
 
 ## Surprising Connections (you probably didn't know these)
-- `techscript_cli` --crate_depends_on--> `techscript_native_runtime`  [EXTRACTED]
-  cli/Cargo.toml → runtime/native_runtime/Cargo.toml
-- `techscript_cli` --crate_depends_on--> `techscript_package_manager`  [EXTRACTED]
-  cli/Cargo.toml → tools/package-manager/Cargo.toml
 - `techscript_cli` --crate_depends_on--> `techscript_ast`  [EXTRACTED]
   cli/Cargo.toml → compiler/ast/Cargo.toml
 - `techscript_formatter` --crate_depends_on--> `techscript_ast`  [EXTRACTED]
   tools/formatter/Cargo.toml → compiler/ast/Cargo.toml
 - `techscript_interpreter` --crate_depends_on--> `techscript_ast`  [EXTRACTED]
   runtime/interpreter/Cargo.toml → compiler/ast/Cargo.toml
+- `techscript_linter` --crate_depends_on--> `techscript_ast`  [EXTRACTED]
+  tools/linter/Cargo.toml → compiler/ast/Cargo.toml
+- `techscript_lsp` --crate_depends_on--> `techscript_ast`  [EXTRACTED]
+  tools/lsp/Cargo.toml → compiler/ast/Cargo.toml
 
 ## Import Cycles
-- 1-file cycle: `compiler/bytecode/src/lib.rs -> compiler/bytecode/src/lib.rs`
-- 1-file cycle: `runtime/interpreter/src/lib.rs -> runtime/interpreter/src/lib.rs`
-- 1-file cycle: `stdlib/src/lib.rs -> stdlib/src/lib.rs`
+- None detected.
 
-## Communities (13 total, 3 thin omitted)
+## Communities (4 total, 1 thin omitted)
 
 ### Community 0 - "Community 0"
-Cohesion: 0.23
-Nodes (15): DiagnosticReporter, Statement, ConstDecl, EnumDecl, ExportDecl, FuncDecl, Ident, ModelDecl (+7 more)
+Cohesion: 0.39
+Nodes (9): techscript_builtins, techscript_cli, techscript_gc, techscript_interpreter, techscript_native_runtime, techscript_package_manager, techscript_runtime, techscript_stdlib (+1 more)
 
 ### Community 1 - "Community 1"
-Cohesion: 0.34
-Nodes (24): techscript_ast, techscript_builtins, techscript_bytecode, techscript_cli, techscript_common, techscript_errors, techscript_formatter, techscript_gc (+16 more)
+Cohesion: 0.61
+Nodes (9): techscript_common, techscript_errors, techscript_formatter, techscript_lexer, techscript_linter, techscript_lsp, techscript_module_resolver, techscript_parser (+1 more)
 
 ### Community 2 - "Community 2"
-Cohesion: 0.16
-Nodes (11): BytecodeModule, CheckedProgram, Program, LoweringResult, Module, Result, RuntimeError, compile() (+3 more)
-
-### Community 3 - "Community 3"
-Cohesion: 0.25
-Nodes (10): DiagnosticReporter, Program, Result, Statement, Vec, Diagnostic, parse(), parse_recovered() (+2 more)
-
-### Community 4 - "Community 4"
-Cohesion: 0.26
-Nodes (4): Default, Self, StdlibRegistry, Option
-
-### Community 5 - "Community 5"
-Cohesion: 0.31
-Nodes (8): Box, FnOnce, RuntimeContext, RuntimeValue, AsyncTask, Result, RuntimeError, Vec
-
-### Community 6 - "Community 6"
-Cohesion: 0.29
-Nodes (6): Capability, HashMap, Rc, Scheduler, StdlibModule, VecDeque
-
-### Community 7 - "Community 7"
-Cohesion: 0.25
-Nodes (5): Callable, MockFunction, StdFunction, StdFnCallback, String
-
-### Community 8 - "Community 8"
-Cohesion: 0.40
-Nodes (4): Option, Commands, Cli, Commands
+Cohesion: 0.80
+Nodes (6): techscript_ast, techscript_bytecode, techscript_ir, techscript_llvm_backend, techscript_optimizer, techscript_syntax
 
 ## Knowledge Gaps
-- **25 isolated node(s):** `Commands`, `Option`, `Commands`, `Program`, `LoweringResult` (+20 more)
+- **4 isolated node(s):** `techscript_gc`, `techscript_native_runtime`, `techscript_package_manager`, `techscript_packager`
   These have ≤1 connection - possible missing edges or undocumented components.
-- **3 thin communities (<3 nodes) omitted from report** — run `graphify query` to explore isolated nodes.
+- **1 thin communities (<3 nodes) omitted from report** — run `graphify query` to explore isolated nodes.
 
 ## Suggested Questions
 _Questions this graph is uniquely positioned to answer:_
 
-- **Why does `StdlibRegistry` connect `Community 4` to `Community 6`, `Community 7`?**
-  _High betweenness centrality (0.029) - this node is a cross-community bridge._
-- **Why does `StdFunction` connect `Community 7` to `Community 5`, `Community 6`?**
-  _High betweenness centrality (0.017) - this node is a cross-community bridge._
-- **Why does `StdlibModule` connect `Community 6` to `Community 4`, `Community 5`, `Community 7`?**
-  _High betweenness centrality (0.016) - this node is a cross-community bridge._
-- **What connects `Commands`, `Option`, `Commands` to the rest of the system?**
-  _25 weakly-connected nodes found - possible documentation gaps or missing edges._
+- **Why does `techscript_cli` connect `Community 0` to `Community 1`, `Community 2`?**
+  _High betweenness centrality (0.238) - this node is a cross-community bridge._
+- **Why does `techscript_interpreter` connect `Community 0` to `Community 1`, `Community 2`?**
+  _High betweenness centrality (0.122) - this node is a cross-community bridge._
+- **Why does `techscript_common` connect `Community 1` to `Community 0`, `Community 2`?**
+  _High betweenness centrality (0.112) - this node is a cross-community bridge._
+- **What connects `techscript_gc`, `techscript_native_runtime`, `techscript_package_manager` to the rest of the system?**
+  _4 weakly-connected nodes found - possible documentation gaps or missing edges._