An igseq cut subcommand could allow a simple interface to extract different antibody regions (e.g. FWR1-FWR3 for to get V genes truncated before CDR3). This should be fairly straightforward if based on the IgBLAST AIRR TSV columns that give start and end positions relative to the query sequence.
An
igseq cutsubcommand could allow a simple interface to extract different antibody regions (e.g. FWR1-FWR3 for to get V genes truncated before CDR3). This should be fairly straightforward if based on the IgBLAST AIRR TSV columns that give start and end positions relative to the query sequence.