From 84d3e9a7c81ba4855b6708f202ef6d2eeaf3ca44 Mon Sep 17 00:00:00 2001 From: Kazeem Hamzat Date: Thu, 11 Jun 2026 14:03:11 +0100 Subject: [PATCH 1/6] Update Package.json Update Package.json --- .../CapabilityStatement-genomics-requirements.json | 2 +- fhirpkg.lock.json | 4 ++-- package.json | 2 +- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/CapabilityStatement/CapabilityStatement-genomics-requirements.json b/CapabilityStatement/CapabilityStatement-genomics-requirements.json index 718e6ed7..250cffb0 100644 --- a/CapabilityStatement/CapabilityStatement-genomics-requirements.json +++ b/CapabilityStatement/CapabilityStatement-genomics-requirements.json @@ -45,7 +45,7 @@ }, { "type": "DocumentReference", - "profile": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-DocumentReference-GenomicDataFile + "profile": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-DocumentReference-GenomicDataFile" }, { "type": "CodeSystem", diff --git a/fhirpkg.lock.json b/fhirpkg.lock.json index df3c15ff..e04a9c6e 100644 --- a/fhirpkg.lock.json +++ b/fhirpkg.lock.json @@ -1,12 +1,12 @@ { "updated": "2026-05-06T10:21:55.9845039+01:00", "dependencies": { - "hl7.fhir.r4.core": "4.0.1", + "hl7.fhir.r4.core": "4.0.1", "hl7.fhir.uv.extensions.r4": "5.3.0-ballot-tc1", "hl7.fhir.uv.xver-r5.r4": "0.1.0", "hl7.fhir.uv.genomics-reporting": "3.0.0", "hl7.fhir.uv.ips": "2.0.0", - "hl7.fhir.eu.laboratory": "0.1.1", + "hl7.fhir.eu.laboratory": "2.0.0", "ihe.iti.pcf": "1.1.0", "hl7.fhir.us.mcode": "4.0.0", "fhir.r4.nhsengland.pathology": "0.1.4-alpha", diff --git a/package.json b/package.json index b104930e..44d68f36 100644 --- a/package.json +++ b/package.json @@ -8,7 +8,7 @@ "hl7.fhir.uv.xver-r5.r4": "0.1.0", "hl7.fhir.uv.genomics-reporting": "3.0.0", "hl7.fhir.uv.ips": "2.0.0", - "hl7.fhir.eu.laboratory": "0.1.1", + "hl7.fhir.eu.laboratory": "2.0.0", "ihe.iti.pcf": "1.1.0", "hl7.fhir.us.mcode": "4.0.0", "fhir.r4.nhsengland.pathology": "0.1.4-alpha", From 4743407551f6a5f3e376c344d1a593195df95401 Mon Sep 17 00:00:00 2001 From: Kazeem Hamzat Date: Thu, 11 Jun 2026 14:09:10 +0100 Subject: [PATCH 2/6] Testing 0.1.1-eu-lab Testing 0.1.1-eu-lab --- fhirpkg.lock.json | 2 +- package.json | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/fhirpkg.lock.json b/fhirpkg.lock.json index e04a9c6e..3cc6f7c8 100644 --- a/fhirpkg.lock.json +++ b/fhirpkg.lock.json @@ -6,7 +6,7 @@ "hl7.fhir.uv.xver-r5.r4": "0.1.0", "hl7.fhir.uv.genomics-reporting": "3.0.0", "hl7.fhir.uv.ips": "2.0.0", - "hl7.fhir.eu.laboratory": "2.0.0", + "hl7.fhir.eu.laboratory": "0.1.1", "ihe.iti.pcf": "1.1.0", "hl7.fhir.us.mcode": "4.0.0", "fhir.r4.nhsengland.pathology": "0.1.4-alpha", diff --git a/package.json b/package.json index 44d68f36..b104930e 100644 --- a/package.json +++ b/package.json @@ -8,7 +8,7 @@ "hl7.fhir.uv.xver-r5.r4": "0.1.0", "hl7.fhir.uv.genomics-reporting": "3.0.0", "hl7.fhir.uv.ips": "2.0.0", - "hl7.fhir.eu.laboratory": "2.0.0", + "hl7.fhir.eu.laboratory": "0.1.1", "ihe.iti.pcf": "1.1.0", "hl7.fhir.us.mcode": "4.0.0", "fhir.r4.nhsengland.pathology": "0.1.4-alpha", From f6f852057712f0cf1e3b29921d1539d425db5a4c Mon Sep 17 00:00:00 2001 From: Kazeem Hamzat Date: Thu, 11 Jun 2026 14:32:55 +0100 Subject: [PATCH 3/6] Aligning to Eu_Lab 2.0 Aligning to Eu_Lab 2.0 --- Patient/Patient-PheobeSmitham-Example.json | 2 +- fhirpkg.lock.json | 2 +- package.json | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/Patient/Patient-PheobeSmitham-Example.json b/Patient/Patient-PheobeSmitham-Example.json index 181eb7c8..10271460 100644 --- a/Patient/Patient-PheobeSmitham-Example.json +++ b/Patient/Patient-PheobeSmitham-Example.json @@ -4,7 +4,7 @@ "meta": { "profile": [ "https://fhir.hl7.org.uk/StructureDefinition/UKCore-Patient", - "http://hl7.eu/fhir/laboratory/StructureDefinition/Patient-eu-lab" + "http://hl7.eu/fhir/base/StructureDefinition/patient-eu-core" ] }, "extension": [ diff --git a/fhirpkg.lock.json b/fhirpkg.lock.json index 3cc6f7c8..e04a9c6e 100644 --- a/fhirpkg.lock.json +++ b/fhirpkg.lock.json @@ -6,7 +6,7 @@ "hl7.fhir.uv.xver-r5.r4": "0.1.0", "hl7.fhir.uv.genomics-reporting": "3.0.0", "hl7.fhir.uv.ips": "2.0.0", - "hl7.fhir.eu.laboratory": "0.1.1", + "hl7.fhir.eu.laboratory": "2.0.0", "ihe.iti.pcf": "1.1.0", "hl7.fhir.us.mcode": "4.0.0", "fhir.r4.nhsengland.pathology": "0.1.4-alpha", diff --git a/package.json b/package.json index b104930e..44d68f36 100644 --- a/package.json +++ b/package.json @@ -8,7 +8,7 @@ "hl7.fhir.uv.xver-r5.r4": "0.1.0", "hl7.fhir.uv.genomics-reporting": "3.0.0", "hl7.fhir.uv.ips": "2.0.0", - "hl7.fhir.eu.laboratory": "0.1.1", + "hl7.fhir.eu.laboratory": "2.0.0", "ihe.iti.pcf": "1.1.0", "hl7.fhir.us.mcode": "4.0.0", "fhir.r4.nhsengland.pathology": "0.1.4-alpha", From 53ac2c8250fdde845378d3db0b241f0efc92fedc Mon Sep 17 00:00:00 2001 From: Kazeem Hamzat Date: Thu, 11 Jun 2026 14:43:47 +0100 Subject: [PATCH 4/6] Update Conceptmap Update Conceptmap --- .../CapabilityStatement-genomics-requirements.json | 4 ++-- ConceptMap/ConceptMap-Genomics-chromosomal-sex.json | 6 +++--- ...nceptMap-Genomics-fetal-maternal-screening-genotype.json | 6 +++--- ...p-Genomics-risk-reason-for-specimen-specialhandling.json | 6 +++--- 4 files changed, 11 insertions(+), 11 deletions(-) diff --git a/CapabilityStatement/CapabilityStatement-genomics-requirements.json b/CapabilityStatement/CapabilityStatement-genomics-requirements.json index 250cffb0..5e0ed355 100644 --- a/CapabilityStatement/CapabilityStatement-genomics-requirements.json +++ b/CapabilityStatement/CapabilityStatement-genomics-requirements.json @@ -2,10 +2,10 @@ "resourceType": "CapabilityStatement", "id": "CapabilityStatement-Genomics-requirements", "url": "https://fhir.nhs.uk/CapabilityStatement/genomics-requirements", - "version": "0.3.0", + "version": "0.3.1", "name": "GenomicsRequirements", "status": "draft", - "date": "2026-01-14T00:00:00+00:00", + "date": "2026-06-11T00:00:00+00:00", "publisher": "digital.nhs.uk", "description": "Conformance requirements for NHS Digital Genomics Implementation Guide", "kind": "requirements", diff --git a/ConceptMap/ConceptMap-Genomics-chromosomal-sex.json b/ConceptMap/ConceptMap-Genomics-chromosomal-sex.json index b69bc8a0..f5431554 100644 --- a/ConceptMap/ConceptMap-Genomics-chromosomal-sex.json +++ b/ConceptMap/ConceptMap-Genomics-chromosomal-sex.json @@ -2,11 +2,11 @@ "resourceType": "ConceptMap", "id": "genomics-chromosomal-sex", "url": "https://fhir.nhs.uk/ConceptMap/genomics-chromosomal-sex", - "version": "0.1.0", + "version": "0.2.0", "name": "GenomicsChromosomalSex", "title": "Genomics Chromosomal Sex", "status": "draft", - "date": "2025-09-05T10:33:00.000Z", + "date": "2026-06-11T10:33:00.000Z", "publisher": "NHS England", "contact": [ { @@ -22,7 +22,7 @@ "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", "purpose": "ConceptMap used for the translation and recording of chromosomal sex. This is intended for the element Observation.code. An appropriate SNOMED CT code or free text should be used to record the sex of other is selected.", "copyright": "Copyright © 2025+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", - "targetUri": "http://snomed.info/sct", + "targetUri": "http://snomed.info/sct?fhir_vs", "group": [ { "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117", diff --git a/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json b/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json index 80049a7b..044d1e24 100644 --- a/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json +++ b/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json @@ -2,11 +2,11 @@ "resourceType": "ConceptMap", "id": "genomics-fetal-maternal-screening-genotype", "url": "https://fhir.nhs.uk/ConceptMap/genomics-fetal-maternal-screening-genotype", - "version": "0.3.0", + "version": "0.4.0", "name": "GenomicsFetalMaternalScreeningGenotype", "title": "Genomics Fetal Maternal Screening Genotype", "status": "draft", - "date": "2025-10-05T21:00:00.000Z", + "date": "2026-16-11T21:00:00.000Z", "publisher": "NHS England", "contact": [ { @@ -22,7 +22,7 @@ "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", "purpose": "ConceptMap used for the translation and recording of concepts for fetal maternal screening genotype. This is intended for the element Condition.code. An appropriate SNOMED CT code or free text should be used to record the Genotype.", "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", - "targetUri": "http://snomed.info/sct", + "targetUri": "http://snomed.info/sct?fhir_vs", "group": [ { "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117", diff --git a/ConceptMap/ConceptMap-Genomics-risk-reason-for-specimen-specialhandling.json b/ConceptMap/ConceptMap-Genomics-risk-reason-for-specimen-specialhandling.json index e9825b38..e55d1ee1 100644 --- a/ConceptMap/ConceptMap-Genomics-risk-reason-for-specimen-specialhandling.json +++ b/ConceptMap/ConceptMap-Genomics-risk-reason-for-specimen-specialhandling.json @@ -2,11 +2,11 @@ "resourceType": "ConceptMap", "id": "genomics-risk-reason-for-specimen-specialhandling", "url": "https://fhir.nhs.uk/ConceptMap/genomics-risk-reason-for-specimen-specialhandling", - "version": "0.3.0", + "version": "0.4.0", "name": "GenomicsRiskReasonForSpecimenSpecialHandling", "title": "Genomics Risk Reason for Specimen Special Handling", "status": "draft", - "date": "2025-09-05T11:00:00.000Z", + "date": "2026-06-11T11:00:00.000Z", "publisher": "NHS England", "contact": [ { @@ -22,7 +22,7 @@ "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", "purpose": "ConceptMap used for the translation and recording of the risk reason for specimen special handling . This is intended for the element Specimen.collection.extension:specimen-specialHandling.valueCoding.code", "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", - "targetUri": "http://snomed.info/sct", + "targetUri": "http://snomed.info/sct?fhir_vs", "group": [ { "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117", From fd8d794a8753b8226bcba2bee212e0df72680d4e Mon Sep 17 00:00:00 2001 From: Kazeem Hamzat Date: Thu, 11 Jun 2026 14:46:49 +0100 Subject: [PATCH 5/6] Aligning Composition to EU-Lab 2.0 Aligning Composition to EU-Lab 2.0 --- Composition/Composition-EULabGenomicReport-Example.json | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/Composition/Composition-EULabGenomicReport-Example.json b/Composition/Composition-EULabGenomicReport-Example.json index 4455a293..92b1687c 100644 --- a/Composition/Composition-EULabGenomicReport-Example.json +++ b/Composition/Composition-EULabGenomicReport-Example.json @@ -26,6 +26,10 @@ } } ], + "identifier": { + "system": "https://fhir.nhs.uk/Id/genomic-report", + "value": "GR-12345" + }, "status": "final", "type": { "coding": [ @@ -76,6 +80,10 @@ "section": [ { "title": "Results", + "text": { + "status": "generated", + "div": "
Genomic findings.
" + }, "code": { "coding": [ { From 1809e05c5635ce1443aec3ca114dd3a42bca9f82 Mon Sep 17 00:00:00 2001 From: Kazeem Hamzat Date: Thu, 11 Jun 2026 14:53:52 +0100 Subject: [PATCH 6/6] Fix CMP Fix CMP --- .../ConceptMap-Genomics-fetal-maternal-screening-genotype.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json b/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json index 044d1e24..c65fe3fd 100644 --- a/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json +++ b/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json @@ -6,7 +6,7 @@ "name": "GenomicsFetalMaternalScreeningGenotype", "title": "Genomics Fetal Maternal Screening Genotype", "status": "draft", - "date": "2026-16-11T21:00:00.000Z", + "date": "2026-06-11T21:00:00.000Z", "publisher": "NHS England", "contact": [ {