diff --git a/CapabilityStatement/CapabilityStatement-genomics-requirements.json b/CapabilityStatement/CapabilityStatement-genomics-requirements.json index 718e6ed7..5e0ed355 100644 --- a/CapabilityStatement/CapabilityStatement-genomics-requirements.json +++ b/CapabilityStatement/CapabilityStatement-genomics-requirements.json @@ -2,10 +2,10 @@ "resourceType": "CapabilityStatement", "id": "CapabilityStatement-Genomics-requirements", "url": "https://fhir.nhs.uk/CapabilityStatement/genomics-requirements", - "version": "0.3.0", + "version": "0.3.1", "name": "GenomicsRequirements", "status": "draft", - "date": "2026-01-14T00:00:00+00:00", + "date": "2026-06-11T00:00:00+00:00", "publisher": "digital.nhs.uk", "description": "Conformance requirements for NHS Digital Genomics Implementation Guide", "kind": "requirements", @@ -45,7 +45,7 @@ }, { "type": "DocumentReference", - "profile": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-DocumentReference-GenomicDataFile + "profile": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-DocumentReference-GenomicDataFile" }, { "type": "CodeSystem", diff --git a/Composition/Composition-EULabGenomicReport-Example.json b/Composition/Composition-EULabGenomicReport-Example.json index 4455a293..92b1687c 100644 --- a/Composition/Composition-EULabGenomicReport-Example.json +++ b/Composition/Composition-EULabGenomicReport-Example.json @@ -26,6 +26,10 @@ } } ], + "identifier": { + "system": "https://fhir.nhs.uk/Id/genomic-report", + "value": "GR-12345" + }, "status": "final", "type": { "coding": [ @@ -76,6 +80,10 @@ "section": [ { "title": "Results", + "text": { + "status": "generated", + "div": "
Genomic findings.
" + }, "code": { "coding": [ { diff --git a/ConceptMap/ConceptMap-Genomics-chromosomal-sex.json b/ConceptMap/ConceptMap-Genomics-chromosomal-sex.json index b69bc8a0..f5431554 100644 --- a/ConceptMap/ConceptMap-Genomics-chromosomal-sex.json +++ b/ConceptMap/ConceptMap-Genomics-chromosomal-sex.json @@ -2,11 +2,11 @@ "resourceType": "ConceptMap", "id": "genomics-chromosomal-sex", "url": "https://fhir.nhs.uk/ConceptMap/genomics-chromosomal-sex", - "version": "0.1.0", + "version": "0.2.0", "name": "GenomicsChromosomalSex", "title": "Genomics Chromosomal Sex", "status": "draft", - "date": "2025-09-05T10:33:00.000Z", + "date": "2026-06-11T10:33:00.000Z", "publisher": "NHS England", "contact": [ { @@ -22,7 +22,7 @@ "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", "purpose": "ConceptMap used for the translation and recording of chromosomal sex. This is intended for the element Observation.code. An appropriate SNOMED CT code or free text should be used to record the sex of other is selected.", "copyright": "Copyright © 2025+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", - "targetUri": "http://snomed.info/sct", + "targetUri": "http://snomed.info/sct?fhir_vs", "group": [ { "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117", diff --git a/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json b/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json index 80049a7b..c65fe3fd 100644 --- a/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json +++ b/ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json @@ -2,11 +2,11 @@ "resourceType": "ConceptMap", "id": "genomics-fetal-maternal-screening-genotype", "url": "https://fhir.nhs.uk/ConceptMap/genomics-fetal-maternal-screening-genotype", - "version": "0.3.0", + "version": "0.4.0", "name": "GenomicsFetalMaternalScreeningGenotype", "title": "Genomics Fetal Maternal Screening Genotype", "status": "draft", - "date": "2025-10-05T21:00:00.000Z", + "date": "2026-06-11T21:00:00.000Z", "publisher": "NHS England", "contact": [ { @@ -22,7 +22,7 @@ "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", "purpose": "ConceptMap used for the translation and recording of concepts for fetal maternal screening genotype. This is intended for the element Condition.code. An appropriate SNOMED CT code or free text should be used to record the Genotype.", "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", - "targetUri": "http://snomed.info/sct", + "targetUri": "http://snomed.info/sct?fhir_vs", "group": [ { "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117", diff --git a/ConceptMap/ConceptMap-Genomics-risk-reason-for-specimen-specialhandling.json b/ConceptMap/ConceptMap-Genomics-risk-reason-for-specimen-specialhandling.json index e9825b38..e55d1ee1 100644 --- a/ConceptMap/ConceptMap-Genomics-risk-reason-for-specimen-specialhandling.json +++ b/ConceptMap/ConceptMap-Genomics-risk-reason-for-specimen-specialhandling.json @@ -2,11 +2,11 @@ "resourceType": "ConceptMap", "id": "genomics-risk-reason-for-specimen-specialhandling", "url": "https://fhir.nhs.uk/ConceptMap/genomics-risk-reason-for-specimen-specialhandling", - "version": "0.3.0", + "version": "0.4.0", "name": "GenomicsRiskReasonForSpecimenSpecialHandling", "title": "Genomics Risk Reason for Specimen Special Handling", "status": "draft", - "date": "2025-09-05T11:00:00.000Z", + "date": "2026-06-11T11:00:00.000Z", "publisher": "NHS England", "contact": [ { @@ -22,7 +22,7 @@ "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.", "purpose": "ConceptMap used for the translation and recording of the risk reason for specimen special handling . This is intended for the element Specimen.collection.extension:specimen-specialHandling.valueCoding.code", "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.", - "targetUri": "http://snomed.info/sct", + "targetUri": "http://snomed.info/sct?fhir_vs", "group": [ { "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117", diff --git a/Patient/Patient-PheobeSmitham-Example.json b/Patient/Patient-PheobeSmitham-Example.json index 181eb7c8..10271460 100644 --- a/Patient/Patient-PheobeSmitham-Example.json +++ b/Patient/Patient-PheobeSmitham-Example.json @@ -4,7 +4,7 @@ "meta": { "profile": [ "https://fhir.hl7.org.uk/StructureDefinition/UKCore-Patient", - "http://hl7.eu/fhir/laboratory/StructureDefinition/Patient-eu-lab" + "http://hl7.eu/fhir/base/StructureDefinition/patient-eu-core" ] }, "extension": [ diff --git a/fhirpkg.lock.json b/fhirpkg.lock.json index df3c15ff..e04a9c6e 100644 --- a/fhirpkg.lock.json +++ b/fhirpkg.lock.json @@ -1,12 +1,12 @@ { "updated": "2026-05-06T10:21:55.9845039+01:00", "dependencies": { - "hl7.fhir.r4.core": "4.0.1", + "hl7.fhir.r4.core": "4.0.1", "hl7.fhir.uv.extensions.r4": "5.3.0-ballot-tc1", "hl7.fhir.uv.xver-r5.r4": "0.1.0", "hl7.fhir.uv.genomics-reporting": "3.0.0", "hl7.fhir.uv.ips": "2.0.0", - "hl7.fhir.eu.laboratory": "0.1.1", + "hl7.fhir.eu.laboratory": "2.0.0", "ihe.iti.pcf": "1.1.0", "hl7.fhir.us.mcode": "4.0.0", "fhir.r4.nhsengland.pathology": "0.1.4-alpha", diff --git a/package.json b/package.json index b104930e..44d68f36 100644 --- a/package.json +++ b/package.json @@ -8,7 +8,7 @@ "hl7.fhir.uv.xver-r5.r4": "0.1.0", "hl7.fhir.uv.genomics-reporting": "3.0.0", "hl7.fhir.uv.ips": "2.0.0", - "hl7.fhir.eu.laboratory": "0.1.1", + "hl7.fhir.eu.laboratory": "2.0.0", "ihe.iti.pcf": "1.1.0", "hl7.fhir.us.mcode": "4.0.0", "fhir.r4.nhsengland.pathology": "0.1.4-alpha",