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KazeemHamzatKazeemHamzat
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Merge branch 'Patch-IOPS-4298-Aligning-to-Eu-Lab-2.0' into Patch-disable-IOPS-Validator
2 parents 80c748d + 1809e05 commit 7205803

9 files changed

Lines changed: 54 additions & 26 deletions

‎CapabilityStatement/CapabilityStatement-DGTS-application.json‎

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"resourceType": "CapabilityStatement",
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"id": "CapabilityStatement-DGTS-application",
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"url": "https://fhir.nhs.uk/CapabilityStatement/DGTS-application",
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"version": "0.1.0",
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"version": "0.2.0",
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"name": "CapabilityStatementDGTSApplication",
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"status": "draft",
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"date": "2025-11-26T00:00:00+00:00",
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"date": "2026-06-01T00:00:00+00:00",
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"publisher": "NHS England",
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"description": "Sample server capability for the Digital Genomic Test Services API",
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"kind": "instance",
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"implementationGuide": [
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"https://fhir.nhs.uk/ImplementationGuide/FHIR-Genomics-Implementation-Guide"
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"implementationGuide": [
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"https://fhir.nhs.uk/ImplementationGuide/FHIR-Genomics-Implementation-Guide"
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],
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"fhirVersion": "4.0.1",
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"format": [
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"application/fhir+json"
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"format": [
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"application/fhir+json"
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],
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"implementation": {
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"description": "Exemplar CapabilityStatement for the GMS DGTS FHIR API"
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},
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"rest": [
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"rest": [
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{
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"mode": "server",
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"documentation": "RESTful endpoints supported by the DGTS FHIR API",
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"resource": [
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"resource": [
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{
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"type": "PlanDefinition",
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"profile": "http://hl7.org/fhir/StructureDefinition/PlanDefinition",
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"name": "context",
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"type": "token"
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},
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{
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"name": "identifier",
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"type": "token"
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},
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{
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"name": "status",
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"type": "token"
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},
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{
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"name": "title",
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"type": "string"
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{
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"name": "version",
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"type": "token"
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},
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{
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"name": "actor-role",
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"definition": "https://fhir.nhs.uk/SearchParameter/plandefinition-actor-role",
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"type": "token",
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"documentation": "Search PlanDefinition by actor option role from the R5 cross-version extension extension-PlanDefinition.actor"
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},
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{
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"name": "actor-type-reference",
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"definition": "https://fhir.nhs.uk/SearchParameter/plandefinition-actor-typereference",
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"type": "reference",
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"documentation": "Search PlanDefinition by actor option typeReference from the R5 cross-version extension extension-PlanDefinition.actor"
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}
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]
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},
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},
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{
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"type": "Library",
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"profile": "http://hl7.org/fhir/StructureDefinition/Library",
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"profile": "http://hl7.org/fhir/StructureDefinition/Library",
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"documentation": "Data requirements for DGTS Genomic Tests",
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"interaction": [
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{
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},
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{
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"type": "SpecimenDefinition",
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"profile": "http://hl7.org/fhir/StructureDefinition/SpecimenDefinition",
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"profile": "http://hl7.org/fhir/StructureDefinition/SpecimenDefinition",
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"documentation": "Specimen requirements for DGTS Genomic Tests",
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"interaction": [
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{

‎CapabilityStatement/CapabilityStatement-genomics-requirements.json‎

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"resourceType": "CapabilityStatement",
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"id": "CapabilityStatement-Genomics-requirements",
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"url": "https://fhir.nhs.uk/CapabilityStatement/genomics-requirements",
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"version": "0.3.0",
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"version": "0.3.1",
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"name": "GenomicsRequirements",
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"status": "draft",
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"date": "2026-01-14T00:00:00+00:00",
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"date": "2026-06-11T00:00:00+00:00",
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"publisher": "digital.nhs.uk",
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"description": "Conformance requirements for NHS Digital Genomics Implementation Guide",
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"kind": "requirements",
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},
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{
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"type": "DocumentReference",
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-DocumentReference-GenomicDataFile
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"profile": "https://fhir.nhs.uk/StructureDefinition/NHSEngland-DocumentReference-GenomicDataFile"
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},
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{
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"type": "CodeSystem",

‎Composition/Composition-EULabGenomicReport-Example.json‎

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}
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}
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],
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"identifier": {
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"system": "https://fhir.nhs.uk/Id/genomic-report",
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"value": "GR-12345"
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},
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"status": "final",
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"type": {
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"coding": [
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"section": [
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{
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"title": "Results",
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"text": {
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"status": "generated",
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"div": "<div xmlns=\"http://www.w3.org/1999/xhtml\">Genomic findings.</div>"
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},
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"code": {
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"coding": [
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{

‎ConceptMap/ConceptMap-Genomics-chromosomal-sex.json‎

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"resourceType": "ConceptMap",
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"id": "genomics-chromosomal-sex",
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"url": "https://fhir.nhs.uk/ConceptMap/genomics-chromosomal-sex",
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"version": "0.1.0",
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"version": "0.2.0",
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"name": "GenomicsChromosomalSex",
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"title": "Genomics Chromosomal Sex",
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"status": "draft",
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"date": "2025-09-05T10:33:00.000Z",
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"date": "2026-06-11T10:33:00.000Z",
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"publisher": "NHS England",
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"contact": [
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{
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"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
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"purpose": "ConceptMap used for the translation and recording of chromosomal sex. This is intended for the element Observation.code. An appropriate SNOMED CT code or free text should be used to record the sex of other is selected.",
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"copyright": "Copyright © 2025+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
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"targetUri": "http://snomed.info/sct",
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"targetUri": "http://snomed.info/sct?fhir_vs",
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"group": [
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{
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"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",

‎ConceptMap/ConceptMap-Genomics-fetal-maternal-screening-genotype.json‎

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"resourceType": "ConceptMap",
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"id": "genomics-fetal-maternal-screening-genotype",
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"url": "https://fhir.nhs.uk/ConceptMap/genomics-fetal-maternal-screening-genotype",
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"version": "0.3.0",
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"version": "0.4.0",
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"name": "GenomicsFetalMaternalScreeningGenotype",
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"title": "Genomics Fetal Maternal Screening Genotype",
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"status": "draft",
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"date": "2025-10-05T21:00:00.000Z",
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"date": "2026-06-11T21:00:00.000Z",
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"publisher": "NHS England",
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"contact": [
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{
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"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
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"purpose": "ConceptMap used for the translation and recording of concepts for fetal maternal screening genotype. This is intended for the element Condition.code. An appropriate SNOMED CT code or free text should be used to record the Genotype.",
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"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
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"targetUri": "http://snomed.info/sct",
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"targetUri": "http://snomed.info/sct?fhir_vs",
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"group": [
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{
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"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",

‎ConceptMap/ConceptMap-Genomics-risk-reason-for-specimen-specialhandling.json‎

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"resourceType": "ConceptMap",
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"id": "genomics-risk-reason-for-specimen-specialhandling",
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"url": "https://fhir.nhs.uk/ConceptMap/genomics-risk-reason-for-specimen-specialhandling",
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"version": "0.3.0",
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"version": "0.4.0",
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"name": "GenomicsRiskReasonForSpecimenSpecialHandling",
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"title": "Genomics Risk Reason for Specimen Special Handling",
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"status": "draft",
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"date": "2025-09-05T11:00:00.000Z",
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"date": "2026-06-11T11:00:00.000Z",
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"publisher": "NHS England",
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"contact": [
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{
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"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
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"purpose": "ConceptMap used for the translation and recording of the risk reason for specimen special handling . This is intended for the element Specimen.collection.extension:specimen-specialHandling.valueCoding.code",
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"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
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"targetUri": "http://snomed.info/sct",
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"targetUri": "http://snomed.info/sct?fhir_vs",
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"group": [
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{
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"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",

‎Patient/Patient-PheobeSmitham-Example.json‎

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"meta": {
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"profile": [
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"https://fhir.hl7.org.uk/StructureDefinition/UKCore-Patient",
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"http://hl7.eu/fhir/laboratory/StructureDefinition/Patient-eu-lab"
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"http://hl7.eu/fhir/base/StructureDefinition/patient-eu-core"
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]
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},
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"extension": [

‎fhirpkg.lock.json‎

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{
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"updated": "2026-05-06T10:21:55.9845039+01:00",
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"dependencies": {
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"hl7.fhir.r4.core": "4.0.1",
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"hl7.fhir.r4.core": "4.0.1",
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"hl7.fhir.uv.extensions.r4": "5.3.0-ballot-tc1",
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"hl7.fhir.uv.xver-r5.r4": "0.1.0",
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"hl7.fhir.uv.genomics-reporting": "3.0.0",
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"hl7.fhir.uv.ips": "2.0.0",
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"hl7.fhir.eu.laboratory": "0.1.1",
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"hl7.fhir.eu.laboratory": "2.0.0",
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"ihe.iti.pcf": "1.1.0",
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"hl7.fhir.us.mcode": "4.0.0",
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"fhir.r4.nhsengland.pathology": "0.1.4-alpha",

‎package.json‎

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"hl7.fhir.uv.xver-r5.r4": "0.1.0",
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"hl7.fhir.uv.genomics-reporting": "3.0.0",
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"hl7.fhir.uv.ips": "2.0.0",
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"hl7.fhir.eu.laboratory": "0.1.1",
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"hl7.fhir.eu.laboratory": "2.0.0",
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"ihe.iti.pcf": "1.1.0",
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"hl7.fhir.us.mcode": "4.0.0",
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"fhir.r4.nhsengland.pathology": "0.1.4-alpha",

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