From c5416620c6144043218b02f17054e1aed56948ed Mon Sep 17 00:00:00 2001 From: Andrew Freiburger Date: Fri, 2 Oct 2026 08:34:04 -0500 Subject: [PATCH] NAR 2026: sync M10_results_structure_curation.tex with Overleaf edits Co-Authored-By: Claude Opus 5.5 (1M context) --- .../latex/sections/M10_results_structure_curation.tex | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/Papers/NAR_Update_2026/latex/sections/M10_results_structure_curation.tex b/Papers/NAR_Update_2026/latex/sections/M10_results_structure_curation.tex index 49f0a645..d9f9fd54 100644 --- a/Papers/NAR_Update_2026/latex/sections/M10_results_structure_curation.tex +++ b/Papers/NAR_Update_2026/latex/sections/M10_results_structure_curation.tex @@ -1,3 +1,4 @@ \subsection{Structure curation}\label{sec:results-structure} -We built and ran our curation pipeline on all structures that would impact the set of roughly 9,000 reactions used in the ModelSEED and PlantSEED reconstruction templates. The conflict pipeline resolved every previously conflicting compound in three curation rounds. i) Instances where the conflict existed at the level of mobile hydrogens were resolved automatically using historical formula ii) instances where the structures were structurally different were resolved manually iii) instances where resolution was not straight-forward were entered in the mass-balance exclusion registry where we fix an arbitrarily chosen formula because no source formula was defensible. \ No newline at end of file +We built and ran our curation pipeline on all structures that would impact the set of roughly 9,000 reactions used in the ModelSEED and PlantSEED reconstruction templates. +The conflict pipeline resolved every previously conflicting compound in a three-staged curation: i) historical formula were used to automatically resolve conflicts in mobile hydrogens; ii) manual curation resolved conflicts in molecular structures; and iii) where steps i-ii fail because of an absence in defensible source formula, reactions were added to a mass-balance exclusion registry where we fix an arbitrarily chosen formula. \ No newline at end of file