eb_hooks.py

# Hooks to customize how EasyBuild installs software in EESSI
# see https://docs.easybuild.io/en/latest/Hooks.html
import ast
import datetime
import glob
import json
import os
import re
from typing import NamedTuple

import easybuild.tools.environment as env
from easybuild.easyblocks.generic.configuremake import obtain_config_guess
from easybuild.framework.easyconfig.constants import EASYCONFIG_CONSTANTS
from easybuild.framework.easyconfig.easyconfig import (
    get_toolchain_hierarchy,
)
from easybuild.tools import config
from easybuild.tools.build_log import EasyBuildError, print_msg, print_warning
from easybuild.tools.config import build_option, install_path, update_build_option
from easybuild.tools.filetools import apply_regex_substitutions, copy_dir, copy_file, remove_file, symlink, which
from easybuild.tools.modules import get_software_root, get_software_root_env_var_name
from easybuild.tools.run import run_cmd
from easybuild.tools.systemtools import AARCH64, POWER, X86_64, det_parallelism, get_cpu_architecture, get_cpu_features, get_gpu_info
from easybuild.tools.toolchain.compiler import OPTARCH_GENERIC
from easybuild.tools.toolchain.toolchain import is_system_toolchain
from easybuild.tools.version import VERSION as EASYBUILD_VERSION

# prefer importing LooseVersion from easybuild.tools, but fall back to distuils in case EasyBuild <= 4.7.0 is used
try:
    from easybuild.tools import LooseVersion
except ImportError:
    from distutils.version import LooseVersion


CPU_TARGET_NEOVERSE_N1 = 'aarch64/neoverse_n1'
CPU_TARGET_NEOVERSE_V1 = 'aarch64/neoverse_v1'
CPU_TARGET_AARCH64_GENERIC = 'aarch64/generic'
CPU_TARGET_A64FX = 'aarch64/a64fx'
CPU_TARGET_NVIDIA_GRACE = 'aarch64/nvidia/grace'

CPU_TARGET_CASCADELAKE = 'x86_64/intel/cascadelake'
CPU_TARGET_ICELAKE = 'x86_64/intel/icelake'
CPU_TARGET_SAPPHIRE_RAPIDS = 'x86_64/intel/sapphirerapids'
CPU_TARGET_ZEN4 = 'x86_64/amd/zen4'
CPU_TARGET_ZEN5 = 'x86_64/amd/zen5'

EESSI_RPATH_OVERRIDE_ATTR = 'orig_rpath_override_dirs'
EESSI_MODULE_ONLY_ATTR = 'orig_module_only'
EESSI_FORCE_ATTR = 'orig_force'
EESSI_SUPPORTED_MODULE_ATTR = 'eessi_supported_module'
EESSI_UNSUPPORTED_MODULE_ATTR = 'eessi_unsupported_module'

SYSTEM = EASYCONFIG_CONSTANTS['SYSTEM'][0]

EESSI_INSTALLATION_REGEX = r"^/cvmfs/[^/]*.eessi.io/versions/"
HOST_INJECTIONS_LOCATION = "/cvmfs/software.eessi.io/host_injections/"
SITE_INSTALLATION_LOCATION = os.getenv("EESSI_SITE_SOFTWARE_PREFIX", HOST_INJECTIONS_LOCATION)

# Make sure a single environment variable name is used for this throughout the hooks
EESSI_IGNORE_ZEN4_GCC1220_ENVVAR="EESSI_IGNORE_LMOD_ERROR_ZEN4_GCC1220"

STACK_REPROD_SUBDIR = 'reprod'

EESSI_SUPPORTED_TOP_LEVEL_TOOLCHAINS = {
    '2023.06': [
        {'name': 'foss', 'version': '2022b'},
        {'name': 'foss', 'version': '2023a'},
        {'name': 'foss', 'version': '2023b'},
    ],
    '2025.06': [
        {'name': 'foss', 'version': '2024a'},
        {'name': 'foss', 'version': '2025a'},
        {'name': 'foss', 'version': '2025b'},
    ],
}
if EASYBUILD_VERSION >= '5.2.0':
    EESSI_SUPPORTED_TOP_LEVEL_TOOLCHAINS['2025.06'].append(
        {'name': 'lfoss', 'version': '2025b'}
    )

if EASYBUILD_VERSION >= '5.3.1':
    EESSI_SUPPORTED_TOP_LEVEL_TOOLCHAINS['2025.06'].append(
        {'name': 'rompi', 'version': '2025a'}
    )

# Supported compute capabilities by CUDA toolkit version
# Obtained by installing all CUDAs from 12.0.0 to 13.1.0, then using:

# #!/bin/bash
#
# CUDA_VERS=(12.0.0 12.1.0 12.1.1 12.2.0 12.2.2 12.3.0 12.3.2 12.4.0 12.5.0 12.6.0 12.8.0 12.9.0 12.9.1 13.0.0 13.0.1 13.0.2 13.1.0)
#
# for ver in ${CUDA_VERS[@]}; do
#     module load CUDA/${ver}
#     ccs=$(nvcc --list-gpu-arch)
#     ccs=$(echo ${ccs} | sed "s/ /', /g" | sed "s/compute_/'/g")
#     echo "    '${ver}': [${ccs}'],"
#     module unload CUDA
# done

CUDA_SUPPORTED_CCS = {
    '12.0.0': ['50', '52', '53', '60', '61', '62', '70', '72', '75', '80', '86', '87', '89', '90'],
    '12.1.0': ['50', '52', '53', '60', '61', '62', '70', '72', '75', '80', '86', '87', '89', '90'],
    '12.1.1': ['50', '52', '53', '60', '61', '62', '70', '72', '75', '80', '86', '87', '89', '90'],
    '12.2.0': ['50', '52', '53', '60', '61', '62', '70', '72', '75', '80', '86', '87', '89', '90'],
    '12.2.2': ['50', '52', '53', '60', '61', '62', '70', '72', '75', '80', '86', '87', '89', '90'],
    '12.3.0': ['50', '52', '53', '60', '61', '62', '70', '72', '75', '80', '86', '87', '89', '90'],
    '12.3.2': ['50', '52', '53', '60', '61', '62', '70', '72', '75', '80', '86', '87', '89', '90'],
    '12.4.0': ['50', '52', '53', '60', '61', '62', '70', '72', '75', '80', '86', '87', '89', '90'],
    '12.5.0': ['50', '52', '53', '60', '61', '62', '70', '72', '75', '80', '86', '87', '89', '90'],
    '12.6.0': ['50', '52', '53', '60', '61', '62', '70', '72', '75', '80', '86', '87', '89', '90'],
    '12.8.0': ['50', '52', '53', '60', '61', '62', '70', '72', '75', '80', '86', '87', '89', '90', '100', '101', '120'],
    '12.9.0': ['50', '52', '53', '60', '61', '62', '70', '72', '75', '80', '86', '87', '89', '90', '100', '101', '103', '120', '121'],
    '12.9.1': ['50', '52', '53', '60', '61', '62', '70', '72', '75', '80', '86', '87', '89', '90', '100', '101', '103', '120', '121'],
    '13.0.0': ['75', '80', '86', '87', '88', '89', '90', '100', '110', '103', '120', '121'],
    '13.0.1': ['75', '80', '86', '87', '88', '89', '90', '100', '110', '103', '120', '121'],
    '13.0.2': ['75', '80', '86', '87', '88', '89', '90', '100', '110', '103', '120', '121'],
    '13.1.0': ['75', '80', '86', '87', '88', '89', '90', '100', '110', '103', '120', '121'],
}

# Ensure that we don't print any messages in --terse mode
# Note that --terse was introduced in EB 4.9.1
orig_print_msg = print_msg
orig_print_warning = print_warning

def print_msg(*args, **kwargs):
    if EASYBUILD_VERSION < '4.9.1' or not build_option('terse'):
        orig_print_msg(*args, **kwargs)


def print_warning(*args, **kwargs):
    if EASYBUILD_VERSION < '4.9.1' or not build_option('terse'):
        orig_print_warning(*args, **kwargs)


def get_cuda_cc_string(self):
    # required keyword was introduce in 5.1.1
    if EASYBUILD_VERSION >= '5.1.1':
        cuda_ccs_string = self.cfg.get_cuda_cc_template_value('cuda_compute_capabilities', required=False)
    # mimic the 'required=False' behavior pre-EB 5.1.1
    else:
        try:
            cuda_ccs_string = self.cfg.get_cuda_cc_template_value('cuda_compute_capabilities')
        except:
            cuda_ccs_string = ''
    return cuda_ccs_string


def is_gcccore_1220_based(**kwargs):
# ecname, ecversion, tcname, tcversion):
    """
    Checks if this easyconfig either _is_ or _uses_ a GCCcore-12.2.0 based toolchain.
    This function is, for example, used to generate errors in GCCcore-12.2.0 based modules for the zen4 architecture
    since zen4 is not fully supported with that toolchain.

    :param str ecname: Name of the software specified in the EasyConfig
    :param str ecversion: Version of the software specified in the EasyConfig
    :param str tcname: Toolchain name specified in the EasyConfig
    :param str tcversion: Toolchain version specified in the EasyConfig
    """
    ecname = kwargs.get('ecname', None)
    ecversion = kwargs.get('ecversion', None)
    tcname = kwargs.get('tcname', None)
    tcversion = kwargs.get('tcversion', None)

    gcccore_based_names = ['GCCcore', 'GCC']
    foss_based_names = ['gfbf', 'gompi', 'foss']
    return (
        (tcname in foss_based_names and tcversion == '2022b') or
        (tcname in gcccore_based_names and LooseVersion(tcversion) == LooseVersion('12.2.0')) or
        (ecname in foss_based_names and ecversion == '2022b') or
        (ecname in gcccore_based_names and LooseVersion(ecversion) == LooseVersion('12.2.0'))
    )


def get_dependency_software_version(software, ec, check_deps=True, check_builddeps=True):
    """
    Returns the software version that this EasyConfig (ec) uses as a (build)dependency.
    If (ec) is simply for the software itself, it will return the version.
    If no software is used as (build)dependency, this function returns None.
    """
    # Provide default
    software_version = None
    ec_dict = ec.asdict()

    # Is this easyconfig for the software itself?
    if ec.name == software:
        software_version = ec.version

    # Check if the software is used as (build) dependency.
    deps = []
    if check_deps:
        deps = deps + ec_dict['dependencies'][:]
    if check_builddeps:
        deps = deps + ec_dict['builddependencies'][:]

    for dep in deps:
        if dep['name'] == software:
            software_version = dep['version']

    return software_version


def is_cuda_cc_supported_by_toolkit(cuda_cc, toolkit_version):
    """
    Checks if the CUDA Compute Capability passed in cuda_cc is supported by the CUDA toolkit version toolkit_version
    Returns True if supported or False if not supported
    """
    # Clean cuda_cc of any suffixes like the 'a' in '9.0a'
    # The regex expects one or more digits, a dot, one or more digits, and then optionally any number of characters
    # It will strip all characters by only return the first capture group (the digits and dot)
    cuda_cc = re.sub(r'^(\d+\.\d+)[a-zA-Z]*$', r'\1', cuda_cc)

    # Strip the dot
    cuda_cc = cuda_cc.replace('.', '')

    # Raise informative error if `toolkit_version` is not yet covered in CUDA_SUPPORTED_CCS
    if not toolkit_version in CUDA_SUPPORTED_CCS:
        msg = f"Trying to determine compatibility between requested CUDA Compute Capability ({cuda_cc}) "
        msg +=f"and CUDA toolkit version {toolkit_version} failed: support for CUDA Compute Capabilities "
        msg +="not known for this toolkit version. Please install the toolkit version manually, run "
        msg +="'nvcc --list-gpu-arch' to determine he supported CUDA Compute Capabilities, and then add these "
        msg +=f"to the CUDA_SUPPORTED_CCS table in the EasyBuild hooks ({build_option('hooks')}). "
        msg += "Alternatively, you can skip the compatibility check altogether by setting the "
        msg += "EESSI_OVERRIDE_CUDA_CC_TOOLKIT_CHECK environment variable."
        raise EasyBuildError(msg)

    if cuda_cc in CUDA_SUPPORTED_CCS[toolkit_version]:
        return True
    else:
        return False


def get_eessi_envvar(eessi_envvar):
    """Get an EESSI environment variable from the environment"""

    eessi_envvar_value = os.getenv(eessi_envvar)
    if eessi_envvar_value is None:
        raise EasyBuildError("$%s is not defined!", eessi_envvar)

    return eessi_envvar_value


def get_rpath_override_dirs(software_name):
    # determine path to installations in software layer via $EESSI_SOFTWARE_PATH
    eessi_software_path = get_eessi_envvar('EESSI_SOFTWARE_PATH')

    # construct the rpath override directory stub
    rpath_injection_stub = os.path.join(
        # Make sure we are looking inside the `host_injections` directory
        eessi_software_path.replace('versions', 'host_injections', 1),
        # Add the subdirectory for the specific software
        'rpath_overrides',
        software_name,
        # We can't know the version, but this allows the use of a symlink
        # to facilitate version upgrades without removing files
        'system',
    )

    # Allow for libraries in lib or lib64
    rpath_injection_dirs = [os.path.join(rpath_injection_stub, x) for x in ('lib', 'lib64')]

    return rpath_injection_dirs


def parse_hook(ec, *args, **kwargs):
    """Main parse hook: trigger custom functions based on software name."""

    # determine path to Prefix installation in compat layer via $EPREFIX
    eprefix = get_eessi_envvar('EPREFIX')

    if ec.name in PARSE_HOOKS:
        PARSE_HOOKS[ec.name](ec, eprefix)

    # inject the GPU property (if required)
    ec = inject_gpu_property(ec)


def parse_list_of_dicts_env(var_name):
    """Parse a list of dicts that are stored in an environment variable string"""

    # Check if the environment variable name is valid (letters, numbers, underscores, and doesn't start with a digit)
    if not re.match(r'^[A-Za-z_][A-Za-z0-9_]*$', var_name):
        raise ValueError(f"Invalid environment variable name: {var_name}")
    list_string = os.getenv(var_name, '[]')

    list_of_dicts = []
    try:
        # Try JSON format first
        list_of_dicts = json.loads(list_string)
    except json.JSONDecodeError:
        try:
            # Fall back to Python literal format
            list_of_dicts = ast.literal_eval(list_string)
        except (ValueError, SyntaxError):
            raise ValueError(f"Environment variable '{var_name}' does not contain a valid list of dictionaries.")

    return list_of_dicts


def verify_toolchains_supported_by_eessi_version(easyconfigs):
    """Each EESSI version supports a limited set of toolchains, sanity check the easyconfigs for toolchain support."""
    eessi_version = get_eessi_envvar('EESSI_VERSION')
    supported_eessi_toolchains = []
    # Environment variable can't have a '.' so replace by '_'
    site_top_level_toolchains_envvar = 'EESSI_SITE_TOP_LEVEL_TOOLCHAINS_' + eessi_version.replace('.', '_')
    site_top_level_toolchains = parse_list_of_dicts_env(site_top_level_toolchains_envvar)
    for top_level_toolchain in EESSI_SUPPORTED_TOP_LEVEL_TOOLCHAINS[eessi_version] + site_top_level_toolchains:
        try:
            supported_eessi_toolchains += get_toolchain_hierarchy(top_level_toolchain)
        except EasyBuildError as error:
            print_msg(f"No toolchain hierarchy found for {top_level_toolchain}, ignoring! ({error})")
    for ec in easyconfigs:
        toolchain = ec['ec']['toolchain']
        # if it is a system toolchain or appears in the list, we are all good
        if is_system_toolchain(toolchain['name']):
            continue
        # This check verifies that the toolchain dict is in the list of supported toolchains.
        # It uses <= as there may be other dict entries in the values returned from get_toolchain_hierarchy()
        # but we only care that the toolchain dict (which has 'name' and 'version') appear.
        elif not any(toolchain.items() <= supported.items() for supported in supported_eessi_toolchains):
            expected_site_top_level_toolchains = [toolchain] + site_top_level_toolchains
            raise EasyBuildError(
                f"Toolchain {toolchain} (required by {ec['full_mod_name']}) is not supported in "
                f"EESSI/{eessi_version}\n"
                f"Supported toolchains are:\n"
                + "\n".join(sorted("  " + str(tc) for tc in supported_eessi_toolchains))
                + "\nIf you are using EESSI as a base for a local software stack, you can add locally supported "
                " toolchains by setting the environment variable:\n"
                f"\texport {site_top_level_toolchains_envvar}='{json.dumps(expected_site_top_level_toolchains)}'\n"
                "(you only need to add the highest level toolchains you use, the toolchain hierarchy is automatically "
                "supported)"
            )


def pre_build_and_install_loop_hook(easyconfigs):
    """Main pre_build_and_install_loop hook: trigger custom functions before beginning installation loop."""

    # Always check that toolchain supported by the EESSI version (unless overridden)
    if os.getenv("EESSI_OVERRIDE_TOOLCHAIN_CHECK"):
        print_warning("Overriding the check that the toolchains are supported by the EESSI version.")
    else:
        verify_toolchains_supported_by_eessi_version(easyconfigs)


def post_ready_hook(self, *args, **kwargs):
    """
    Post-ready hook: limit parallellism for selected builds based on software name and CPU target.
                     parallelism needs to be limited because some builds require a lot of memory per used core.
    """
    if self.iter_idx > 0:
        # only tweak level of parallelism in 1st iteration, not subsequent ones
        self.log.info(f"Not limiting parallellism again in iteration #{self.iter_idx+1}")
        return

    # 'parallel' easyconfig parameter (EasyBuild 4.x) or the parallel property (EasyBuild 5.x)
    # is set via EasyBlock.set_parallel in ready step based on available cores
    # (and --max-parallel EasyBuild configuration option in EasyBuild 5.x)
    if hasattr(self, 'parallel'):
        curr_parallel = self.parallel
    else:
        curr_parallel = self.cfg['parallel']

    if curr_parallel == 1:
        return  # no need to limit if already using 1 core

    # get CPU target
    cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')

    # derive level of parallelism from available cores and ulimit settings in current session
    session_parallel = det_parallelism()

    new_parallel = None

    # check if we have limits defined for this software
    if self.name in PARALLELISM_LIMITS:
        limits = PARALLELISM_LIMITS[self.name]

        # first check for CPU-specific limit
        if cpu_target in limits:
            operation_func, operation_args = limits[cpu_target]
            new_parallel = operation_func(session_parallel, operation_args)
        # then check for generic limit (applies to all CPU targets)
        elif '*' in limits:
            operation_func, operation_args = limits['*']
            new_parallel = operation_func(session_parallel, operation_args)
        else:
            return  # no applicable limits found

    # check if there's a general limit set for CPU target
    elif cpu_target in PARALLELISM_LIMITS:
        operation_func, operation_args = PARALLELISM_LIMITS[cpu_target]
        new_parallel = operation_func(session_parallel, operation_args)

    # apply the limit if it's lower than current
    if new_parallel is not None and new_parallel < curr_parallel:
        if hasattr(self, 'parallel'):
            self.cfg.parallel = new_parallel
        else:
            self.cfg['parallel'] = new_parallel

        # also update the "parallel" template value
        self.cfg.template_values['parallel'] = new_parallel
        self.cfg.generate_template_values()

        msg = "limiting parallelism to %s (was %s, derived parallelism %s) for %s on %s "
        msg+ "to avoid out-of-memory failures during building/testing"
        print_msg(msg % (new_parallel, curr_parallel, session_parallel, self.name, cpu_target), log=self.log)


def pre_prepare_hook_unsupported_modules(self, *args, **kwargs):
    """Set env var to ignore specific LmodErrors from dependencies if this module is know to be unsupported"""
    if is_unsupported_module(self):
        unsup_mod = getattr(self, EESSI_UNSUPPORTED_MODULE_ATTR)
        print_msg(f"Setting {unsup_mod.envvar} to allow loading dependencies that otherwise throw an LmodError")
        os.environ[unsup_mod.envvar] = "1"


def post_prepare_hook_unsupported_modules(self, *args, **kwargs):
    """Unset env var to ignore specific LmodErrors from dependencies if this module is know to be unsupported"""
    if is_unsupported_module(self):
        unsup_mod = getattr(self, EESSI_UNSUPPORTED_MODULE_ATTR)
        print_msg(f"Unsetting {unsup_mod.envvar}")
        del os.environ[unsup_mod.envvar]


def pre_prepare_hook(self, *args, **kwargs):
    """Main pre-prepare hook: trigger custom functions."""

    # Check if we have an MPI family in the toolchain (returns None if there is not)
    mpi_family = self.toolchain.mpi_family()

    # Inject an RPATH override for MPI (if needed)
    if mpi_family:
        # Get list of override directories
        mpi_rpath_override_dirs = get_rpath_override_dirs(mpi_family)

        # update the relevant option (but keep the original value so we can reset it later)
        if hasattr(self, EESSI_RPATH_OVERRIDE_ATTR):
            raise EasyBuildError("'self' already has attribute %s! Can't use pre_prepare hook.",
                                 EESSI_RPATH_OVERRIDE_ATTR)

        setattr(self, EESSI_RPATH_OVERRIDE_ATTR, build_option('rpath_override_dirs'))
        if getattr(self, EESSI_RPATH_OVERRIDE_ATTR):
            # self.EESSI_RPATH_OVERRIDE_ATTR is (already) a colon separated string, let's make it a list
            orig_rpath_override_dirs = [getattr(self, EESSI_RPATH_OVERRIDE_ATTR)]
            rpath_override_dirs = ':'.join(orig_rpath_override_dirs + mpi_rpath_override_dirs)
        else:
            rpath_override_dirs = ':'.join(mpi_rpath_override_dirs)
        update_build_option('rpath_override_dirs', rpath_override_dirs)
        print_msg("Updated rpath_override_dirs (to allow overriding MPI family %s): %s",
                  mpi_family, rpath_override_dirs)

    if self.name in PRE_PREPARE_HOOKS:
        PRE_PREPARE_HOOKS[self.name](self, *args, **kwargs)

    # Always trigger this, regardless of ec.name
    pre_prepare_hook_unsupported_modules(self, *args, **kwargs)

    # Always trigger this, regardless of ec.name
    pre_prepare_hook_cuda_dependant(self, *args, **kwargs)


def post_prepare_hook_gcc_prefixed_ld_rpath_wrapper(self, *args, **kwargs):
    """
    Post-configure hook for GCCcore:
    - copy RPATH wrapper script for linker commands to also have a wrapper in
      place with system type prefix like 'x86_64-pc-linux-gnu'
    """
    if self.name == 'GCCcore':
        config_guess = obtain_config_guess()
        system_type, _ = run_cmd(config_guess, log_all=True)
        cmd_prefix = '%s-' % system_type.strip()
        if cmd_prefix.startswith('riscv64-unknown-'):
            # The 2025.06 compatibility layer for RISC-V is built with CHOST=riscv64-pc-linux-gnu,
            # while config.guess returns riscv64-unknown-linux-gnu.
            # If we can't find an ld with the original cmd_prefix, but can find one with the -pc- prefix,
            # we simply override the original cmd_prefix.
            eprefix = get_eessi_envvar('EPREFIX')
            cmd_prefix_riscv_pc = cmd_prefix.replace('-unknown-', '-pc-')
            if (
                not os.path.exists(os.path.join(eprefix, 'usr', 'bin', cmd_prefix + 'ld')) and
                os.path.exists(os.path.join(eprefix, 'usr', 'bin',  cmd_prefix_riscv_pc + 'ld'))
            ):
                self.log.info(f"Using {cmd_prefix_riscv_pc} instead of {cmd_prefix} as command prefix.")
                cmd_prefix = cmd_prefix_riscv_pc
        for cmd in ('ld', 'ld.gold', 'ld.bfd'):
            wrapper = which(cmd)
            if wrapper is None:
                if cmd in ['ld.gold']:
                    # newer compatibility layers don't have ld.gold
                    continue
                else:
                    raise EasyBuildError(f"No RPATH wrapper script found for {cmd}.")
            self.log.info("Path to %s wrapper: %s" % (cmd, wrapper))
            wrapper_dir = os.path.dirname(wrapper)
            prefix_wrapper = os.path.join(wrapper_dir, cmd_prefix + cmd)
            copy_file(wrapper, prefix_wrapper)
            self.log.info("Path to %s wrapper with '%s' prefix: %s" % (cmd, cmd_prefix, which(prefix_wrapper)))

            # we need to tweak the copied wrapper script, so that:
            regex_subs = [
                # - CMD in the script is set to the command name without prefix, because EasyBuild's rpath_args.py
                #   script that is used by the wrapper script only checks for 'ld', 'ld.gold', etc.
                #   when checking whether or not to use -Wl
                ('^CMD=.*', 'CMD=%s' % cmd),
                # - the path to the correct actual binary is logged and called
                ('/%s ' % cmd, '/%s ' % (cmd_prefix + cmd)),
            ]
            apply_regex_substitutions(prefix_wrapper, regex_subs)
    else:
        raise EasyBuildError("GCCcore-specific hook triggered for non-GCCcore easyconfig?!")


def post_prepare_hook(self, *args, **kwargs):
    """Main post-prepare hook: trigger custom functions."""

    if hasattr(self, EESSI_RPATH_OVERRIDE_ATTR):
        # Reset the value of 'rpath_override_dirs' now that we are finished with it
        update_build_option('rpath_override_dirs', getattr(self, EESSI_RPATH_OVERRIDE_ATTR))
        print_msg("Resetting rpath_override_dirs to original value: %s", getattr(self, EESSI_RPATH_OVERRIDE_ATTR))
        delattr(self, EESSI_RPATH_OVERRIDE_ATTR)

    if self.name in POST_PREPARE_HOOKS:
        POST_PREPARE_HOOKS[self.name](self, *args, **kwargs)

    # Always trigger this, regardless of ec.name
    post_prepare_hook_unsupported_modules(self, *args, **kwargs)


def parse_hook_casacore_disable_vectorize(ec, eprefix):
    """
    Disable 'vectorize' toolchain option for casacore 3.5.0 on aarch64/neoverse_v1
    Compiling casacore 3.5.0 with GCC 13.2.0 (foss-2023b) gives an error when building for aarch64/neoverse_v1.
    See also, https://github.com/EESSI/software-layer/pull/479
    """
    if ec.name == 'casacore':
        tcname, tcversion = ec['toolchain']['name'], ec['toolchain']['version']
        if (
            LooseVersion(ec.version) == LooseVersion('3.5.0') and
            tcname == 'foss' and tcversion == '2023b'
        ):
            cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
            if cpu_target == CPU_TARGET_NEOVERSE_V1:
                # Make sure the toolchainopts key exists, and the value is a dict,
                # before we add the option to disable vectorization
                if 'toolchainopts' not in ec or ec['toolchainopts'] is None:
                    ec['toolchainopts'] = {}
                ec['toolchainopts']['vectorize'] = False
                print_msg("Changed toochainopts for %s: %s", ec.name, ec['toolchainopts'])
            else:
                print_msg("Not changing option vectorize for %s on non-neoverse_v1", ec.name)
        else:
            print_msg("Not changing option vectorize for %s %s %s", ec.name, ec.version, ec.toolchain)
    else:
        raise EasyBuildError("casacore-specific hook triggered for non-casacore easyconfig?!")


def parse_hook_cgal_toolchainopts_precise(ec, eprefix):
    """Enable 'precise' rather than 'strict' toolchain option for CGAL on POWER."""
    if ec.name == 'CGAL':
        if get_cpu_architecture() == POWER:
            # 'strict' implies '-mieee-fp', which is not supported on POWER
            # see https://github.com/easybuilders/easybuild-framework/issues/2077
            ec['toolchainopts']['strict'] = False
            ec['toolchainopts']['precise'] = True
            print_msg("Tweaked toochainopts for %s: %s", ec.name, ec['toolchainopts'])
    else:
        raise EasyBuildError("CGAL-specific hook triggered for non-CGAL easyconfig?!")


def parse_hook_fontconfig_add_fonts(ec, eprefix):
    """Inject --with-add-fonts configure option for fontconfig."""
    if ec.name == 'fontconfig':
        # make fontconfig aware of fonts included with compat layer
        with_add_fonts = '--with-add-fonts=%s' % os.path.join(eprefix, 'usr', 'share', 'fonts')
        ec.update('configopts', with_add_fonts)
        print_msg("Added '%s' configure option for %s", with_add_fonts, ec.name)
    else:
        raise EasyBuildError("fontconfig-specific hook triggered for non-fontconfig easyconfig?!")


def parse_hook_grpcio_zlib(ec, ecprefix):
    """Adjust preinstallopts to use ZLIB from compat layer."""
    if ec.name == 'grpcio':
        target_list = ['1.57.0', '1.67.1', '1.70.0']
        if ec.version in target_list:
            exts_list = ec['exts_list']
            original_preinstallopts = (exts_list[0][2])['preinstallopts']
            original_option = "GRPC_PYTHON_BUILD_SYSTEM_ZLIB=True"
            new_option = "GRPC_PYTHON_BUILD_SYSTEM_ZLIB=False"
            (exts_list[0][2])['preinstallopts'] = original_preinstallopts.replace(original_option, new_option, 1)
            print_msg("Modified the easyconfig to use compat ZLIB with GRPC_PYTHON_BUILD_SYSTEM_ZLIB=False")
        else:
            print_warning("%s version %s not in target list %s, not applying hook", ec.name, ec.version, target_list)
    else:
        raise EasyBuildError("grpcio-specific hook triggered for a non-grpcio easyconfig?!")


def parse_hook_mesa_use_llvm_minimal(ec, eprefix):
    """
    Replace Mesa dependency on LLVM 18.1.8 by one on LLVM 18.1.8-minimal,
    as the full LLVM 18.1.8 installation does not have sysroot support.
    """
    if ec.name == 'Mesa' and ec.version == '24.1.3':
        deps = ec['dependencies']
        llvm_name, llvm_version = ('LLVM', '18.1.8')
        for idx, dep in enumerate(deps):
            if dep[0] == llvm_name and dep[1] == llvm_version:
                deps[idx] = (llvm_name, llvm_version, '-minimal')
                break


def parse_hook_openblas_relax_lapack_tests_num_errors(ec, eprefix):
    """Relax number of failing numerical LAPACK tests for aarch64/neoverse_v1 CPU target for OpenBLAS < 0.3.23"""
    cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
    if ec.name == 'OpenBLAS':
        if LooseVersion(ec.version) < LooseVersion('0.3.23'):
            # relax maximum number of failed numerical LAPACK tests for aarch64/neoverse_v1 CPU target
            # since the default setting of 150 that works well on other aarch64 targets and x86_64 is a bit too strict
            # See https://github.com/EESSI/software-layer/issues/314
            cfg_option = 'max_failing_lapack_tests_num_errors'
            if cpu_target == CPU_TARGET_NEOVERSE_V1:
                orig_value = ec[cfg_option]
                ec[cfg_option] = 400
                print_msg("Maximum number of failing LAPACK tests with numerical errors for %s relaxed to %s (was %s)",
                          ec.name, ec[cfg_option], orig_value)
            else:
                print_msg("Not changing option %s for %s on non-AARCH64", cfg_option, ec.name)
    else:
        raise EasyBuildError("OpenBLAS-specific hook triggered for non-OpenBLAS easyconfig?!")


def parse_hook_pybind11_replace_catch2(ec, eprefix):
    """
    Replace Catch2 build dependency in pybind11 easyconfigs with one that doesn't use system toolchain.
    cfr. https://github.com/easybuilders/easybuild-easyconfigs/pull/19270
    """
    # this is mainly necessary to avoid that --missing keeps reporting Catch2/2.13.9 is missing,
    # and to avoid that we need to use "--from-pr 19270" for every easyconfigs that (indirectly) depends on pybind11
    if ec.name == 'pybind11' and ec.version in ['2.10.3', '2.11.1']:
        build_deps = ec['builddependencies']
        catch2_build_dep = None
        catch2_name, catch2_version = ('Catch2', '2.13.9')
        for idx, build_dep in enumerate(build_deps):
            if build_dep[0] == catch2_name and build_dep[1] == catch2_version:
                catch2_build_dep = build_dep
                break
        if catch2_build_dep and len(catch2_build_dep) == 4 and catch2_build_dep[3] == SYSTEM:
            build_deps[idx] = (catch2_name, catch2_version)


def parse_hook_qt5_check_qtwebengine_disable(ec, eprefix):
    """
    Disable check for QtWebEngine in Qt5 as workaround for problem with determining glibc version.
    """
    if ec.name == 'Qt5':
        # workaround for glibc version being reported as "UNKNOWN" in Gentoo Prefix environment by EasyBuild v4.7.2,
        # see also https://github.com/easybuilders/easybuild-framework/pull/4290
        ec['check_qtwebengine'] = False
        print_msg("Checking for QtWebEgine in Qt5 installation has been disabled")
    else:
        raise EasyBuildError("Qt5-specific hook triggered for non-Qt5 easyconfig?!")


def parse_hook_qt6_libinput(ec, eprefix):
    """
    Add dependency on libinput to Qt6.
    This is not included in upstream EasyBuild as it brings a dependency on system-d
    """
    qt6_toolchain_version_to_libinput_version_map = {'14.3.0': '1.30.1'}
    if ec.name == 'Qt6':
        # Only enforcing from GCCcore 14.3.0 onwards for Qt6 6.9.3 onwards
        if ec.toolchain.version >= LooseVersion('14.3.0'):
            if ec.version >= LooseVersion('6.9.3'):
                dep_names = [dep[0] for dep in ec['dependencies']]
                if 'libinput' not in dep_names:
                    if ec.toolchain.version in qt6_toolchain_version_to_libinput_version_map.keys():
                        libinput = ('libinput', qt6_toolchain_version_to_libinput_version_map[ec.toolchain.version])
                        ec['dependencies'].append(libinput)
                        print_msg(f"Added {libinput} dependency for {ec.name} {ec.version}")
                    else:
                        raise EasyBuildError(
                            f"No libinput dependency found for {ec.name} {ec.version}, please update relevant Qt6 hook"
                        )
    else:
        raise EasyBuildError(f"Qt6-specific hook triggered for non-Qt6 easyconfig?!")

def parse_hook_maturin(ec, eprefix):
    """
    Replace build dependency on Rust 1.88.0 by 1.91.1,
    as 1.88.0 causes segmentation faults on A64FX.
    cfr. https://github.com/EESSI/software-layer/pull/1357
    """
    if ec.name == 'maturin':
        if ec.version == '1.9.1':
            orig_rust = ('Rust', '1.88.0')
            new_rust = ('Rust', '1.91.1')
            if orig_rust in ec['builddependencies']:
                rust_index = ec['builddependencies'].index(orig_rust)
                ec['builddependencies'][rust_index] = new_rust
                print_msg(f"Replaced {orig_rust} build dependency by {new_rust} for {ec.name} {ec.version}")
    else:
        raise EasyBuildError("maturin-specific hook triggered for non-maturin easyconfig?!")


def parse_hook_ucx_eprefix(ec, eprefix):
    """Make UCX aware of compatibility layer via additional configuration options."""
    if ec.name == 'UCX':
        # Don't enable --with-sysroot, as it will prefix library paths in .la files
        # with a = sign, causing weird issues for applications that depend on UCX (and use libtool)
        # ec.update('configopts', '--with-sysroot=%s' % eprefix)
        ec.update('configopts', '--with-rdmacm=%s' % os.path.join(eprefix, 'usr'))
        print_msg("Using custom configure options for %s: %s", ec.name, ec['configopts'])
    else:
        raise EasyBuildError("UCX-specific hook triggered for non-UCX easyconfig?!")


def parse_hook_freeimage_aarch64(ec, *args, **kwargs):
    """
    Make sure to build with -fPIC on ARM to avoid
    https://github.com/EESSI/software-layer/pull/736#issuecomment-2373261889
    """
    if ec.name == 'FreeImage' and ec.version in ('3.18.0',):
        if get_eessi_envvar('EESSI_CPU_FAMILY') == 'aarch64':
            # Make sure the toolchainopts key exists, and the value is a dict,
            # before we add the option to enable PIC and disable PNG_ARM_NEON_OPT
            if 'toolchainopts' not in ec or ec['toolchainopts'] is None:
                ec['toolchainopts'] = {}
            ec['toolchainopts']['pic'] = True
            ec['toolchainopts']['extra_cflags'] = '-DPNG_ARM_NEON_OPT=0'
            print_msg("Changed toolchainopts for %s: %s", ec.name, ec['toolchainopts'])


def pre_fetch_hook(self, *args, **kwargs):
    """Main pre fetch hook: trigger custom functions based on software name."""
    if self.name in PRE_FETCH_HOOKS:
        PRE_FETCH_HOOKS[ec.name](self, *args, **kwargs)

    # Always trigger this one, regardless of self.name
    pre_fetch_hook_unsupported_modules(self, *args, **kwargs)

    # Always check the software installation path
    pre_fetch_hook_check_installation_path(self, *args, **kwargs)


# Check the installation path so we verify that accelerator software always gets installed into the correct location
def pre_fetch_hook_check_installation_path(self, *args, **kwargs):
    # When we know the CUDA status, we will need to verify the installation path
    # if we are doing an EESSI or host_injections installation
    accelerator_deps = ['CUDA', 'ROCm-LLVM']
    accelerator_toolchains = ['rocm-compilers', 'rompi', 'rfbf', 'rfoss']
    strict_eessi_installation = (
        bool(re.search(EESSI_INSTALLATION_REGEX, self.installdir)) or
        self.installdir.startswith(SITE_INSTALLATION_LOCATION))
    if strict_eessi_installation and not os.getenv("EESSI_OVERRIDE_STRICT_INSTALLPATH_CHECK"):
        dependency_names = self.cfg.dependency_names()
        if (
            self.cfg.name in accelerator_deps
            or any(dep in dependency_names for dep in accelerator_deps)
            or self.toolchain.name in accelerator_toolchains
        ):
            # Make sure the path is an accelerator location
            if "/accel/" not in self.installdir:
                raise EasyBuildError(
                    f"It seems you are trying to install an accelerator package {self.cfg.name} into a "
                    f"non-accelerator location {self.installdir}. You need to reconfigure your installation to target "
                    "the correct location. If using the EESSI-extend module, this means reloading that module "
                    "with EESSI_ACCELERATOR_INSTALL set:\n"
                    "  EESSI_ACCELERATOR_INSTALL=1 module load EESSI-extend"
                    )
        else:
            # If we don't have an accelerator dependency then we should be in a CPU installation path
            if "/accel/" in self.installdir:
                raise EasyBuildError(
                    f"It seems you are trying to install a CPU-only package {self.cfg.name} into accelerator location "
                    f"{self.installdir}. If this is a dependency of the package you are really interested in you will "
                    "need to first install the CPU-only dependencies of that package. If using the EESSI-extend "
                    "module, this means reloading that module with EESSI_ACCELERATOR_INSTALL unset:\n"
                    "  unset EESSI_ACCELERATOR_INSTALL && module load EESSI-extend"
                    )


class UnsupportedModule(NamedTuple):
    """
        Environment variable and error message for an unsupported module.
        envvar: the name of the environment variable that needs to be set to ignore the LmodError
                that this unsupported module would otherwise generate
        errmsg: the actual LmodError message that should be printed
    """
    envvar: str
    errmsg: str


def is_unsupported_module(self):
    """
    Determine if the given module is unsupported in EESSI, and hence if a dummy module needs to be built that just prints an LmodError.
    If a module is unsupported, this function will set the EESSI_UNSUPPORTED_MODULE_ATTR attribute on `self`,
    and assign an `UnsupportedModule` NamedTuple to it.
    If a module is supported, this function will set the EESSI_SUPPORTED_MODULE_ATTR attribut on `self`
    (and set it to True).
    """

    # If this function was already called by an earlier hook, evaluation of whether this is an unsupported module was
    # already done. No need to redo it: save time and return early
    if hasattr(self, EESSI_SUPPORTED_MODULE_ATTR):
        return False
    elif hasattr(self, EESSI_UNSUPPORTED_MODULE_ATTR):
        return True

    # Foss-2022b is not supported on Zen4
    cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
    if cpu_target == CPU_TARGET_ZEN4 and is_gcccore_1220_based(ecname=self.name, ecversion=self.version, tcname=self.toolchain.name, tcversion=self.toolchain.version):
        msg = "EasyConfigs using toolchains based on GCCcore-12.2.0 are not supported on Zen4 architectures. "
        msg += "Building with '--module-only --force' and injecting an LmodError into the modulefile."
        print_warning(msg)
        errmsg = "EasyConfigs using toolchains based on GCCcore-12.2.0 are not supported for the Zen4 architecture.\\n"
        errmsg += "See https://www.eessi.io/docs/known_issues/eessi-2023.06/#gcc-1220-and-foss-2022b-based-modules-cannot-be-loaded-on-zen4-architecture"
        var=EESSI_IGNORE_ZEN4_GCC1220_ENVVAR
        setattr(self, EESSI_UNSUPPORTED_MODULE_ATTR, UnsupportedModule(envvar=var, errmsg=errmsg))
        return True

    if not os.getenv("EESSI_OVERRIDE_CUDA_CC_CUDNN_CHECK"):
      cudnn_ver = get_dependency_software_version("cuDNN", ec=self.cfg, check_deps=True, check_builddeps=True)
      if cudnn_ver:
          # cuda_ccs_string is e.g. "8.0,9.0"
          cuda_ccs_string = get_cuda_cc_string(self)
          # cuda_ccs is empty if none are defined
          if cuda_ccs_string:
              # cuda_ccs is a comma-seperated string. Convert to list for easier handling
              cuda_ccs = cuda_ccs_string.split(',')
              # cuDNN 9.12.0 dropped support for CC 7.0
              if LooseVersion(cudnn_ver) >= '9.12.0' and any([LooseVersion(cuda_cc) <= '7.0' for cuda_cc in cuda_ccs]):
                    msg = f"Requested a CUDA Compute Capability ({cuda_ccs}) that is not supported by the cuDNN "
                    msg += f"version ({cudnn_ver}) used by this software. Switching to '--module-only --force' "
                    msg += "and injectiong an LmodError into the modulefile. You can override this behaviour by "
                    msg += "setting the EESSI_OVERRIDE_CUDA_CC_CUDNN_CHECK environment variable."
                    print_warning(msg)
                    # Use a normalized variable name for the CUDA ccs: strip any suffix, and replace commas
                    cuda_ccs_string = re.sub(r'[a-zA-Z]', '', cuda_ccs_string).replace(',', '_')
                    # Also replace periods, those are not officially supported in environment variable names
                    var=f"EESSI_IGNORE_CUDNN_{cudnn_ver}_CC_{cuda_ccs_string}".replace('.', '_')
                    errmsg = f"EasyConfigs using cuDNN {cudnn_ver} or newer are not supported for (all) requested Compute "
                    errmsg +=f"Capabilities: {cuda_ccs}.\\n"
                    setattr(self, EESSI_UNSUPPORTED_MODULE_ATTR, UnsupportedModule(envvar=var,errmsg=errmsg))
                    return True


    # If the CUDA toolkit is a dependency, check that it supports (all) requested CUDA Compute Capabilities
    # Otherwise, mark this as unsupported
    if not os.getenv("EESSI_OVERRIDE_CUDA_CC_TOOLKIT_CHECK"):
        cudaver = get_dependency_software_version("CUDA", ec=self.cfg, check_deps=True, check_builddeps=True)
        if cudaver:
            # cuda_ccs_string is e.g. "8.0,9.0"
            cuda_ccs_string = get_cuda_cc_string(self)
            # cuda_ccs is empty if none are defined
            if cuda_ccs_string:
                # cuda_ccs is a comma-seperated string. Convert to list for easier handling
                cuda_ccs = cuda_ccs_string.split(',')
                # Check if any of the CUDA CCs is unsupported. If so, append the error
                if any(
                    [not is_cuda_cc_supported_by_toolkit(cuda_cc=cuda_cc, toolkit_version=cudaver) for cuda_cc in cuda_ccs]
                ):
                    msg = f"Requested a CUDA Compute Capability ({cuda_ccs}) that is not supported by the CUDA "
                    msg += f"toolkit version ({cudaver}) used by this software. Switching to '--module-only --force' "
                    msg += "and injectiong an LmodError into the modulefile. You can override this behaviour by "
                    msg += "setting the EESSI_OVERRIDE_CUDA_CC_TOOLKIT_CHECK environment variable."
                    print_warning(msg)
                    # Use a normalized variable name for the CUDA ccs: strip any suffix, and replace commas
                    cuda_ccs_string = re.sub(r'[a-zA-Z]', '', cuda_ccs_string).replace(',', '_')
                    # Also replace periods, those are not officially supported in environment variable names
                    var=f"EESSI_IGNORE_CUDA_{cudaver}_CC_{cuda_ccs_string}".replace('.', '_')
                    errmsg = f"EasyConfigs using CUDA {cudaver} or older are not supported for (all) requested Compute "
                    errmsg +=f"Capabilities: {cuda_ccs}.\\n"
                    setattr(self, EESSI_UNSUPPORTED_MODULE_ATTR, UnsupportedModule(envvar=var,errmsg=errmsg))
                    return True

    # If all the above logic passed, this module is supported
    setattr(self, EESSI_SUPPORTED_MODULE_ATTR, True)
    return False


def pre_fetch_hook_unsupported_modules(self, *args, **kwargs):
    """Use --force --module-only if building a module for unsupported software,
    e.g. foss-2022b-based EasyConfigs for Zen4.
    We will generate a modulefile and have it print an LmodError.
    """
    if is_unsupported_module(self):
        if hasattr(self, EESSI_MODULE_ONLY_ATTR):
            raise EasyBuildError("'self' already has attribute %s! Can't use pre_fetch hook.",
                                 EESSI_MODULE_ONLY_ATTR)
        setattr(self, EESSI_MODULE_ONLY_ATTR, build_option('module_only'))
        update_build_option('module_only', 'True')
        print_msg("Updated build option 'module-only' to 'True'")

        if hasattr(self, EESSI_FORCE_ATTR):
            raise EasyBuildError("'self' already has attribute %s! Can't use pre_fetch hook.",
                                 EESSI_FORCE_ATTR)
        setattr(self, EESSI_FORCE_ATTR, build_option('force'))
        update_build_option('force', 'True')
        print_msg("Updated build option 'force' to 'True'")


def pre_module_hook_unsupported_module(self, *args, **kwargs):
    """Make module load-able during module step"""
    if is_unsupported_module(self):
        unsup_mod = getattr(self, EESSI_UNSUPPORTED_MODULE_ATTR)
        if hasattr(self, 'initial_environ'):
            # Allow the module to be loaded in the module step (which uses initial environment)
            print_msg(f"Setting {unsup_mod.envvar} in initial environment")
            self.initial_environ[unsup_mod.envvar] = "1"
        extra_footer='if (not os.getenv("%s")) then LmodError("%s") end' % (unsup_mod.envvar, unsup_mod.errmsg)
        # Append extra_footer if a modluafooter already exists. Otherwise, simply assign
        self.cfg['modluafooter'] = self.cfg['modluafooter'] + '\n' + extra_footer if self.cfg['modluafooter'] else extra_footer


def post_module_hook_unsupported_module(self, *args, **kwargs):
    """Revert changes from pre_fetch_hook_unsupported_modules"""
    if is_unsupported_module(self):
        unsup_mod = getattr(self, EESSI_UNSUPPORTED_MODULE_ATTR)
        if hasattr(self, EESSI_MODULE_ONLY_ATTR):
            update_build_option('module_only', getattr(self, EESSI_MODULE_ONLY_ATTR))
            print_msg("Restored original build option 'module_only' to %s" % getattr(self, EESSI_MODULE_ONLY_ATTR))
        else:
            raise EasyBuildError("Cannot restore module_only to it's original value: 'self' is missing attribute %s.",
                                 EESSI_MODULE_ONLY_ATTR)

        if hasattr(self, EESSI_FORCE_ATTR):
            update_build_option('force', getattr(self, EESSI_FORCE_ATTR))
            print_msg("Restored original build option 'force' to %s" % getattr(self, EESSI_FORCE_ATTR))
        else:
            raise EasyBuildError("Cannot restore force to it's original value: 'self' is misisng attribute %s.",
                                 EESSI_FORCE_ATTR)

        # If the variable to allow loading is set, remove it
        if hasattr(self, 'initial_environ'):
            if self.initial_environ.get(unsup_mod.envvar, False):
                print_msg(f"Removing {unsup_mod.envvar} in initial environment")
                del self.initial_environ[unsup_mod.envvar]


def post_easyblock_hook_copy_easybuild_subdir(self, *args, **kwargs):
    """
    Post easyblock hook that copies the easybuild subdirectory of every installed application
    to a central and timestamped location in the root of the software stack, e.g.:
    /path/to/stack/reprod/MyApp/1.2-foss-2025a/20250102T12:34:56Z
    """

    stack_reprod_dir = os.path.join(os.path.dirname(install_path()), STACK_REPROD_SUBDIR)
    now_utc_timestamp = datetime.datetime.now(datetime.UTC).strftime('%Y%m%d_%H%M%S%Z')
    app_easybuild_dir = os.path.join(self.installdir, config.log_path(ec=self.cfg))
    app_reprod_dir = os.path.join(stack_reprod_dir, self.install_subdir, now_utc_timestamp, 'easybuild')
    copy_dir(app_easybuild_dir, app_reprod_dir)


def pre_prepare_hook_cuda_dependant(self, *args, **kwargs):
    """
    CUDA 12.8.0 doesn't support the 10.0f and 12.0f targets, only 10.0 and 12.0. This hook converts
    any CC 10.0f / 12.0f into 10.0 / 12.0 if the current package depends on CUDA.
    """

    cudaver = get_dependency_software_version("CUDA", ec=self.cfg, check_deps=True, check_builddeps=True)
    if cudaver and cudaver == '12.8.0':
        cuda_cc = build_option('cuda_compute_capabilities')
        if cuda_cc and ('10.0f' in cuda_cc or '12.0f' in cuda_cc):
            updated_cuda_cc = [v.replace('.0f', '.0') if v in ['10.0f', '12.0f'] else v for v in cuda_cc]
            update_build_option('cuda_compute_capabilities', updated_cuda_cc)


def pre_prepare_hook_cudnn(self, *args, **kwargs):
    """
    cuDNN is a binary install, that doesn't always have the device code for the suffixed CUDA
    Compute Capabilities such as 9.0a, 10.0f, 12.0f etc. This hooks strips the suffices for
    cuDNN versions that don't have suffix-specific device code embedded in (all) their files,
    as retaining the suffixes would lead to the EasyBuild CUDA sanity check failing.
    """

    if self.name == 'cuDNN':
        # cuDNN 9.5.0.50 doesn't have support for 9.0a in all binaries
        if self.version == "9.5.0.50":
            cuda_cc = build_option('cuda_compute_capabilities')
            if cuda_cc and '9.0a' in cuda_cc:
                updated_cuda_cc = [v.replace('9.0a', '9.0') for v in cuda_cc]
                update_build_option('cuda_compute_capabilities', updated_cuda_cc)
        # cuDNN 9.10.1.4 doesn't have support for 10.0f and 12.0f in all binaries
        elif self.version == "9.10.1.4":
            cuda_cc = build_option('cuda_compute_capabilities')
            if cuda_cc and '10.0f' in cuda_cc:
                updated_cuda_cc = [v.replace('10.0f', '10.0') for v in cuda_cc]
                update_build_option('cuda_compute_capabilities', updated_cuda_cc)
            elif cuda_cc and '12.0f' in cuda_cc:
                updated_cuda_cc = [v.replace('12.0f', '12.0') for v in cuda_cc]
                update_build_option('cuda_compute_capabilities', updated_cuda_cc)


def pre_prepare_hook_highway_handle_test_compilation_issues(self, *args, **kwargs):
    """
    Solve issues with compiling or running the tests on both
    neoverse_n1 and neoverse_v1 with Highway 1.0.4 and GCC 12.3.0:
      - for neoverse_n1 we set optarch to GENERIC
      - for neoverse_v1 and a64fx we completely disable the tests
    cfr. https://github.com/EESSI/software-layer/issues/469
    """
    if self.name == 'Highway':
        tcname, tcversion = self.toolchain.name, self.toolchain.version
        cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
        # note: keep condition in sync with the one used in
        # post_prepare_hook_highway_handle_test_compilation_issues
        if self.version in ['1.0.4'] and tcname == 'GCCcore' and tcversion == '12.3.0':
            if cpu_target in [CPU_TARGET_A64FX, CPU_TARGET_NEOVERSE_V1, CPU_TARGET_NVIDIA_GRACE]:
                self.cfg.update('configopts', '-DHWY_ENABLE_TESTS=OFF')
            if cpu_target == CPU_TARGET_NEOVERSE_N1:
                self.orig_optarch = build_option('optarch')
                update_build_option('optarch', OPTARCH_GENERIC)
    else:
        raise EasyBuildError("Highway-specific hook triggered for non-Highway easyconfig?!")


def post_prepare_hook_highway_handle_test_compilation_issues(self, *args, **kwargs):
    """
    Post-prepare hook for Highway to reset optarch build option.
    """
    if self.name == 'Highway':
        tcname, tcversion = self.toolchain.name, self.toolchain.version
        cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
        # note: keep condition in sync with the one used in
        # pre_prepare_hook_highway_handle_test_compilation_issues
        if self.version in ['1.0.4'] and tcname == 'GCCcore' and tcversion == '12.3.0':
            if cpu_target == CPU_TARGET_NEOVERSE_N1:
                update_build_option('optarch', self.orig_optarch)


def pre_prepare_hook_llvm_a64fx(self, *args, **kwargs):
    """
    Solve issues with compiling LLVM 14 and 15 on A64FX by changing the optarch build option.
    Rust 1.65.0 also includes LLVM 15, so we do the same for that application.
    cfr. https://github.com/EESSI/software-layer/issues/1213
    """
    cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
    if cpu_target == CPU_TARGET_A64FX:
        if (self.name == 'LLVM' and self.version in ['14.0.6', '15.0.5']) or (self.name == 'Rust' and self.version == '1.65.0'):
            self.orig_optarch = build_option('optarch')
            update_build_option('optarch', 'march=armv8.2-a')


def pre_prepare_hook_pytorch(self, *args, **kwargs):
    """
    Solve PyTorch test failures due to:
    cannot enable executable stack as shared object requires: Invalid argument

    Glibc prevents loading of shared libraries with an executable stack.
    We can work around it by reverting to old behavior by setting glibc.rtld.execstack=2,
    which forces the stack to be executable at process startup.
    See:
    https://github.com/ValveSoftware/Source-1-Games/issues/6982
    https://gitlab.archlinux.org/archlinux/packaging/packages/glibc/-/issues/19
    https://sourceware.org/bugzilla/show_bug.cgi?id=32653
    """
    if self.name == 'PyTorch':
        if self.version in ['2.6.0', '2.7.1', '2.9.1']:
            eessi_version = get_eessi_envvar('EESSI_VERSION')
            if eessi_version == '2025.06':
                os.environ['GLIBC_TUNABLES'] = 'glibc.rtld.execstack=2'
    else:
        raise EasyBuildError("PyTorch-specific hook triggered for non-PyTorch easyconfig?!")


def pre_prepare_hook_LAMMPS_kokkos_CUDA_families(self, *args, **kwargs):
    """
    Kokkos does not have support building for GPU families.
    This cause problems for EasyBuild cuda sanity check for CUDA Compute Capalities such as 9.0a, 10.0f, 12.0f etc.
    This hook strips the suffixes when building LAMMPS with kokkos.
    """
    if self.name == 'LAMMPS':
        if self.version in ['22Jul2025']:
            if self.cfg['kokkos']:
                cuda_cc = build_option('cuda_compute_capabilities')
                if cuda_cc and '9.0a' in cuda_cc:
                    updated_cuda_cc = [v.replace('9.0a', '9.0') for v in cuda_cc]
                    update_build_option('cuda_compute_capabilities', updated_cuda_cc)
                elif cuda_cc and '10.0f' in cuda_cc:
                    updated_cuda_cc = [v.replace('10.0f', '10.0') for v in cuda_cc]
                    update_build_option('cuda_compute_capabilities', updated_cuda_cc)
                elif cuda_cc and '12.0f' in cuda_cc:
                    updated_cuda_cc = [v.replace('12.0f', '12.0') for v in cuda_cc]
                    update_build_option('cuda_compute_capabilities', updated_cuda_cc)


def post_prepare_hook_llvm_a64fx(self, *args, **kwargs):
    """
    Post-prepare hook for LLVM 14 and 15 on A64FX to reset optarch build option.
    """
    cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
    if cpu_target == CPU_TARGET_A64FX:
        if (self.name == 'LLVM' and self.version in ['14.0.6', '15.0.5']) or (self.name == 'Rust' and self.version == '1.65.0'):
            update_build_option('optarch', self.orig_optarch)


def pre_configure_hook(self, *args, **kwargs):
    """Main pre-configure hook: trigger custom functions based on software name."""
    if self.name in PRE_CONFIGURE_HOOKS:
        PRE_CONFIGURE_HOOKS[self.name](self, *args, **kwargs)

    # workaround for a Zlib macro being renamed in Gentoo, see https://bugs.gentoo.org/383179
    # (solves "expected initializer before 'OF'" errors)
    if self.name in ['FreeXL', 'libspatialite', 'VSEARCH']:
        self.cfg.update('configopts', 'CPPFLAGS="-DOF=_Z_OF ${CPPFLAGS}"')


def pre_configure_hook_BLIS(self, *args, **kwargs):
    """
    Pre-configure hook for BLIS
    - fix "Illegal instruction" problem on A64FX by adding -DCACHE_SECTOR_SIZE_READONLY to $CFLAGS for BLIS 0.9.0, cfr. https://github.com/flame/blis/issues/800
    - fall back to zen3 for zen5 to solve "Unable to automatically detect hardware type" error
    """
    if self.name == 'BLIS':
        cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
        if self.version in ('0.9.0', '1.0', '1.1') and cpu_target == CPU_TARGET_A64FX:
            # last argument of BLIS' configure command is configuration target (usually 'auto' for auto-detect),
            # specifying of variables should be done before that
            config_opts = self.cfg['configopts'].split(' ')
            cflags_var = 'CFLAGS="$CFLAGS -DCACHE_SECTOR_SIZE_READONLY"'
            config_target = config_opts[-1]
            self.cfg['configopts'] = ' '.join(config_opts[:-1] + [cflags_var, config_target])
        if self.version in ('1.0', '1.1', '2.0') and cpu_target == CPU_TARGET_ZEN5:
          self.cfg['cpu_architecture'] = 'zen3'
    else:
        raise EasyBuildError("BLIS-specific hook triggered for non-BLIS easyconfig?!")


def pre_configure_hook_CUDA_Samples_test_remove(self, *args, **kwargs):
    """skip immaTensorCoreGemm in CUDA-Samples for compute capability 7.0."""
    if self.name == 'CUDA-Samples' and self.version in ['12.1']:
        # Get compute capability from build option
        cuda_caps = build_option('cuda_compute_capabilities')
        # Check if compute capability 7.0 is in the list
        if cuda_caps and '7.0' in cuda_caps:
            print_msg("Applying hook for CUDA-Samples %s with compute capability 7.0", self.version)
            # local_filters is set by the easyblock, remove path to the Makefile instead
            makefile_path = os.path.join(self.start_dir, 'Samples/3_CUDA_Features/immaTensorCoreGemm/Makefile')
            if os.path.exists(makefile_path):
                remove_file(makefile_path)
                print_msg("Removed Makefile at %s to skip immaTensorCoreGemm build", makefile_path)
            else:
                print_msg("Makefile not found at %s", makefile_path)
    else:
        raise EasyBuildError("CUDA-Samples-specific hook triggered for non-CUDA-Samples easyconfig?!")


def pre_configure_hook_grass(self, *args, **kwargs):
    """
    Pre-configure hook for GRASS to remove filtered deps specific configopts lines for readline, zlib, and bzlib
    """
    if self.name == 'GRASS':
        # determine path to Prefix installation in compat layer via $EPREFIX
        eprefix = get_eessi_envvar('EPREFIX')

        # Dependencies for which the configuration options need to be replaced
        filtered_deps = ['readline', 'zlib', 'bzlib']
        for dep in filtered_deps:
            self.cfg['configopts'] = re.sub(fr'--with-{dep}-includes=\S*', f'--with-{dep}-includes=$EPREFIX/usr/include', self.cfg['configopts'])
            self.cfg['configopts'] = re.sub(fr'--with-{dep}-libs=\S*', f'--with-{dep}-libs=$EPREFIX/usr/lib64', self.cfg['configopts'])
        print_msg("Using custom configure options for %s", self.name)
    else:
        raise EasyBuildError("GRASS-specific hook triggered for non-GRASS easyconfig?!")


def pre_configure_hook_score_p(self, *args, **kwargs):
    """
    Pre-configure hook for Score-p
    - specify correct path to binutils (in compat layer)
    """
    if self.name == 'Score-P':

        # determine path to Prefix installation in compat layer via $EPREFIX
        eprefix = get_eessi_envvar('EPREFIX')

        binutils_lib_path_glob_pattern = os.path.join(eprefix, 'usr', 'lib*', 'binutils', '*-linux-gnu', '2.*')
        binutils_lib_path = glob.glob(binutils_lib_path_glob_pattern)
        if len(binutils_lib_path) == 1:
            self.cfg.update('configopts', '--with-libbfd-lib=' + binutils_lib_path[0])
            self.cfg.update('configopts', '--with-libbfd-include=' + os.path.join(binutils_lib_path[0], 'include'))
        else:
            raise EasyBuildError("Failed to isolate path for binutils libraries using %s, got %s",
                                 binutils_lib_path_glob_pattern, binutils_lib_path)

    else:
        raise EasyBuildError("Score-P-specific hook triggered for non-Score-P easyconfig?!")


def pre_configure_hook_dyninst(self, *args, **kwargs):
    """
    Pre-configure hook for Dyninst
    - specify correct path to binutils (in compat layer)
    """
    if self.name == 'Dyninst':

        # determine path to Prefix installation in compat layer via $EPREFIX
        eprefix = get_eessi_envvar('EPREFIX')

        binutils_lib_path_glob_pattern = os.path.join(eprefix, 'usr', 'lib*', 'binutils', '*-linux-gnu', '2.*')
        binutils_lib_path = glob.glob(binutils_lib_path_glob_pattern)
        if len(binutils_lib_path) == 1:
            print_msg("Defining LibIberty variables for Dyninst...")
            self.cfg.update('configopts', '-DLibIberty_ROOT_DIR=' + binutils_lib_path[0])
            self.cfg.update('configopts', '-DLibIberty_INCLUDE_DIRS=' + os.path.join(binutils_lib_path[0], 'include'))
            self.cfg.update('configopts', '-DLibIberty_LIBRARIES=' + os.path.join(binutils_lib_path[0], 'libiberty.a'))
        else:
            raise EasyBuildError("Failed to isolate path for binutils libraries using %s, got %s",
                                 binutils_lib_path_glob_pattern, binutils_lib_path)

    else:
        raise EasyBuildError("Dyninst-specific hook triggered for non-Dyninst easyconfig?!")


def pre_configure_hook_extrae(self, *args, **kwargs):
    """
    Pre-configure hook for Extrae
    - avoid use of 'which' in configure script
    - specify correct path to binutils/zlib (in compat layer)
    """
    if self.name == 'Extrae':

        # determine path to Prefix installation in compat layer via $EPREFIX
        eprefix = get_eessi_envvar('EPREFIX')

        binutils_lib_path_glob_pattern = os.path.join(eprefix, 'usr', 'lib*', 'binutils', '*-linux-gnu', '2.*')
        binutils_lib_path = glob.glob(binutils_lib_path_glob_pattern)
        if len(binutils_lib_path) == 1:
            if self.version < LooseVersion('5.0.0'):
                self.cfg.update('configopts', '--with-binutils=' + binutils_lib_path[0])
            else:
                # Setting --with-binutils to the real binutils subdir (as for older versions) causes issues for finding addr2line,
                # as it will try to find that binary in $BINUTILS_ROOT/bin,
                # so we use $EPREFIX/usr instead.
                # Also, as of version 5, we can use more specific flags for binutils headers and libraries.
                self.cfg.update('configopts', '--with-binutils=' + os.path.join(eprefix, 'usr'))
                self.cfg.update('configopts', '--with-binutils-headers=' + os.path.join(binutils_lib_path[0], 'include'))
                self.cfg.update('configopts', '--with-binutils-libs=' + binutils_lib_path[0])
        else:
            raise EasyBuildError("Failed to isolate path for binutils libraries using %s, got %s",
                                 binutils_lib_path_glob_pattern, binutils_lib_path)

        # zlib is a filtered dependency, so we need to manually specify it's location to avoid the host version
        self.cfg.update('configopts', '--with-libz=' + eprefix)

        # replace use of 'which' with 'command -v' in several files, since 'which' is broken in EESSI build container
        self.cfg.update(
            'preconfigopts',
            "sed -i.orig 's/`which /`command -v /g' config/mpi-macros.m4 configure.ac config/macros.m4 include/Makefile.am Makefile.am tests/overhead/Makefile.am && "
            "autoreconf -fi && "
        )
    else:
        raise EasyBuildError("Extrae-specific hook triggered for non-Extrae easyconfig?!")

def pre_configure_hook_graphviz(self, *args, **kwargs):
    """Pre-configure hook for Graphviz:
    - avoid undefined $EBROOTZLIB and $EBROOTLIBTOOL env vars during configure step
    """
    if self.name == 'Graphviz':
        eprefix = get_eessi_envvar('EPREFIX')
        usr_dir = os.path.join(eprefix, 'usr')

        for software in ('zlib', 'libtool'):
            var_name = get_software_root_env_var_name(software)
            env.setvar(var_name, usr_dir)

        old_configopts = self.cfg['configopts']
        old_items = set(filter(None, old_configopts.split(' ')))

        # Replace --with-ltdl-lib and --with-zlibdir options defined in the EC to point to compat layer
        lib_dir = os.path.join(usr_dir, 'lib64')
        new_items = set()
        # Add to the new_items all the old items except the `--with-ltdl-lib` and `--with-ltdl-lib` for
        # which we fix the lib dir to lib64 instead of lib
        for item in old_items:
            if item.startswith('--with-ltdl-lib'):
                new_items.add(f'--with-ltdl-lib={lib_dir}')
            elif item.startswith('--with-zlibdir'):
                new_items.add(f'--with-zlibdir={lib_dir}')
            else:
                new_items.add(item)

        self.cfg['configopts'] = ' '.join(new_items)
    else:
        raise EasyBuildError("Graphviz-specific hook triggered for non-Graphviz easyconfig?!")

def pre_configure_hook_gobject_introspection(self, *args, **kwargs):
    """
    pre-configure hook for GObject-Introspection:
    - prevent GObject-Introspection from setting $LD_LIBRARY_PATH if EasyBuild is configured to filter it, see:
      https://github.com/EESSI/software-layer/issues/196
    """
    if self.name == 'GObject-Introspection':
        # inject a line that removes all items from runtime_path_envvar that are in $EASYBUILD_FILTER_ENVVARS
        sed_cmd = r'sed -i "s@\(^\s*runtime_path_envvar = \)\(.*\)@'
        sed_cmd += r'\1\2\n\1 [x for x in runtime_path_envvar if not x in os.environ.get(\'EASYBUILD_FILTER_ENV_VARS\', \'\').split(\',\')]@g"'
        sed_cmd += ' %(start_dir)s/giscanner/ccompiler.py && '
        self.cfg.update('preconfigopts', sed_cmd)
    else:
        raise EasyBuildError("GObject-Introspection-specific hook triggered for non-GObject-Introspection easyconfig?!")


def pre_configure_hook_llvm(self, *args, **kwargs):
    """Adjust internal configure options for the LLVM EasyBlock to reinstate filtered out dependencies.
    In the LLVM EasyBlock, most checks concerning loaded modules are performed at the configure_step.
    The EB uses a global `general_opts` dict to keep track of options that needs to be reused across stages.
    The way the EB is structured does allow to inject a CMAKE option through `self._cfgopts` which is a splitted list
    of the `configure_opts` passed through the EC, but does not allow to override as the `general_opts` dict will
    take precedence over the `self._cfgopts` list.

    We can instead set the environment variable that EasyBuild uses for `get_software_root` to trick the EB into
    into pointing to the compat layer.
    """
    if self.name in ['LLVM', 'ROCm-LLVM']:
        from easybuild.easyblocks.generic.bundle import Bundle
        from easybuild.easyblocks.llvm import EB_LLVM

        eprefix = get_eessi_envvar('EPREFIX')

        def recursive_set_deps(item, softwares):
            if isinstance(item, (list, tuple)):
                for elem in item:
                    recursive_set_deps(elem, softwares)
            elif isinstance(item, Bundle):
                recursive_set_deps(item.comp_instances, softwares)
            elif isinstance(item, EB_LLVM):
                for sftw in softwares:
                    var_name = get_software_root_env_var_name(sftw)
                    env.setvar(var_name, os.path.join(eprefix, 'usr'))
                    item.deps.append(sftw)

        recursive_set_deps(self, softwares=('zlib', 'ncurses'))
    else:
        raise EasyBuildError("LLVM-specific hook triggered for non-LLVM easyconfig?!")


def pre_configure_hook_openblas_optarch_generic(self, *args, **kwargs):
    """
    Pre-configure hook for OpenBLAS: add DYNAMIC_ARCH=1 to build/test/install options when using --optarch=GENERIC
    """
    # note: OpenBLAS easyblock was updated in https://github.com/easybuilders/easybuild-easyblocks/pull/3492
    # to take care of this already, so at some point this hook can be removed...
    if self.name == 'OpenBLAS':
        if build_option('optarch') == OPTARCH_GENERIC:
            dynamic_arch = 'DYNAMIC_ARCH=1'
            for step in ('build', 'test', 'install'):
                if dynamic_arch not in self.cfg[f'{step}opts']:
                    self.cfg.update(f'{step}opts', dynamic_arch)

            if get_cpu_architecture() == AARCH64:
                # when building for aarch64/generic, we also need to set TARGET=ARMV8 to make sure
                # that the driver parts of OpenBLAS are compiled generically;
                # see also https://github.com/OpenMathLib/OpenBLAS/issues/4945
                target_armv8 = 'TARGET=ARMV8'
                for step in ('build', 'test', 'install'):
                    if target_armv8 not in self.cfg[f'{step}opts']:
                        self.cfg.update(f'{step}opts', target_armv8)

                # use -mtune=generic rather than -mcpu=generic in $CFLAGS for aarch64/generic,
                # because -mcpu=generic implies a particular -march=armv* which clashes with those used by OpenBLAS
                # when building with DYNAMIC_ARCH=1
                mcpu_generic = '-mcpu=generic'
                cflags = os.getenv('CFLAGS')
                if mcpu_generic in cflags:
                    cflags = cflags.replace(mcpu_generic, '-mtune=generic')
                    self.log.info("Replaced -mcpu=generic with -mtune=generic in $CFLAGS")
                    env.setvar('CFLAGS', cflags)
    else:
        raise EasyBuildError("OpenBLAS-specific hook triggered for non-OpenBLAS easyconfig?!")


def pre_configure_hook_openmpi_ipv6(self, *args, **kwargs):
    """
    Pre-configure hook to enable IPv6 support in OpenMPI from EESSI 2025.06 onwards
    """
    if self.name == 'OpenMPI':
        eessi_version = get_eessi_envvar('EESSI_VERSION')
        if eessi_version and LooseVersion(eessi_version) >= '2025.06':
            self.cfg.update('configopts', '--enable-ipv6')
    else:
        raise EasyBuildError("OpenMPI-specific hook triggered for non-OpenMPI easyconfig?!")


def pre_configure_hook_pmix_ipv6(self, *args, **kwargs):
    """
    Pre-configure hook to enable IPv6 support in PMIx from EESSI 2025.06 onwards
    """
    if self.name == 'PMIx':
        eessi_version = get_eessi_envvar('EESSI_VERSION')
        if eessi_version and LooseVersion(eessi_version) >= '2025.06':
            self.cfg.update('configopts', '--enable-ipv6')
    else:
        raise EasyBuildError("PMIx-specific hook triggered for non-PMIx easyconfig?!")


def pre_configure_hook_prrte_ipv6(self, *args, **kwargs):
    """
    Pre-configure hook to enable IPv6 support in PRRTE from EESSI 2025.06 onwards
    """
    if self.name == 'PRRTE':
        eessi_version = get_eessi_envvar('EESSI_VERSION')
        if eessi_version and LooseVersion(eessi_version) >= '2025.06':
            self.cfg.update('configopts', '--enable-ipv6')
    else:
        raise EasyBuildError("PRRTE-specific hook triggered for non-PRRTE easyconfig?!")


def pre_configure_hook_libfabric_disable_psm3_x86_64_generic(self, *args, **kwargs):
    """Add --disable-psm3 to libfabric configure options when building with --optarch=GENERIC on x86_64."""
    if self.name == 'libfabric':
        if get_cpu_architecture() == X86_64:
            generic = build_option('optarch') == OPTARCH_GENERIC
            no_avx = 'avx' not in get_cpu_features()
            if generic or no_avx:
                self.cfg.update('configopts', '--disable-psm3')
                print_msg("Using custom configure options for %s: %s", self.name, self.cfg['configopts'])
    else:
        raise EasyBuildError("libfabric-specific hook triggered for non-libfabric easyconfig?!")


def pre_configure_hook_metabat_filtered_zlib_dep(self, *args, **kwargs):
    """
    Pre-configure hook for MetaBAT:
    - take into account that zlib is a filtered dependency,
      and that there's no libz.a in the EESSI compat layer
    """
    if self.name == 'MetaBAT':
        configopts = self.cfg['configopts']
        regex = re.compile(r"\$EBROOTZLIB/lib/libz.a")
        self.cfg['configopts'] = regex.sub('$EPREFIX/usr/lib64/libz.so', configopts)
    else:
        raise EasyBuildError("MetaBAT-specific hook triggered for non-MetaBAT easyconfig?!")


def pre_configure_hook_wrf_aarch64(self, *args, **kwargs):
    """
    Pre-configure hook for WRF:
    - patch arch/configure_new.defaults so building WRF with foss toolchain works on aarch64
    """
    if self.name == 'WRF':
        if get_cpu_architecture() == AARCH64:
            pattern = "Linux x86_64 ppc64le, gfortran"
            repl = "Linux x86_64 aarch64 ppc64le, gfortran"
            if LooseVersion(self.version) <= LooseVersion('3.9.0'):
                self.cfg.update('preconfigopts', "sed -i 's/%s/%s/g' arch/configure_new.defaults && " % (pattern, repl))
                print_msg("Using custom preconfigopts for %s: %s", self.name, self.cfg['preconfigopts'])

            if LooseVersion('4.0.0') <= LooseVersion(self.version) <= LooseVersion('4.2.1'):
                self.cfg.update('preconfigopts', "sed -i 's/%s/%s/g' arch/configure.defaults && " % (pattern, repl))
                print_msg("Using custom preconfigopts for %s: %s", self.name, self.cfg['preconfigopts'])
    else:
        raise EasyBuildError("WRF-specific hook triggered for non-WRF easyconfig?!")


def pre_configure_hook_LAMMPS_zen4_and_aarch64_cuda(self, *args, **kwargs):
    """
    pre-configure hook for LAMMPS:
    - set kokkos_arch on x86_64/amd/zen4 and aarch64/nvidia/grace
    - Disable SIMD for Aarch64 + cuda builds
    """

    # Get cpu_target for zen4 hook
    cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')

    if self.name == 'LAMMPS':
        # Set kokkos_arch for LAMMPS version which do not have support for the target architecture
        # This is no longer required with easybuild 5.1.2
        if self.version in ('2Aug2023_update2', '2Aug2023_update4', '29Aug2024'):
            if get_cpu_architecture() == X86_64:
                if cpu_target == CPU_TARGET_ZEN4:
                    # There is no support for ZEN4 in LAMMPS yet so falling back to ZEN3
                    self.cfg['kokkos_arch'] = 'ZEN3'
            elif get_cpu_architecture() == AARCH64:
                if cpu_target == CPU_TARGET_NVIDIA_GRACE:
                    # There is no support for NVIDA grace in LAMMPS yet so falling back to ARMV81
                    self.cfg['kokkos_arch'] = 'ARMV81'

        # Disable SIMD for specific CUDA versions
        if self.version == '2Aug2023_update2':
            if get_cpu_architecture() == AARCH64:
                if self.cuda:
                    for dep in self.cfg.dependencies():
                        if 'CUDA' == dep['name']:
                            # This was broken until CUDA 13.1
                            if dep['version'] < LooseVersion('13.1'):
                                self.cfg['kokkos_arch'] = 'ARMV70'
                                cxxflags = os.getenv('CXXFLAGS', '')
                                cxxflags = cxxflags.replace('-mcpu=native', '')
                                cxxflags += ' -march=armv8-a+nosimd'
                                self.log.info("Setting CXXFLAGS to disable NEON: %s", cxxflags)
                                env.setvar('CXXFLAGS', cxxflags)

    else:
        raise EasyBuildError("LAMMPS-specific hook triggered for non-LAMMPS easyconfig?!")


def pre_configure_hook_cmake_system(self, *args, **kwargs):
    """
    pre-configure hook for CMake built with SYSTEM toolchain:
    - remove configure options that link to ncurses static libraries for CMake with system toolchain;
      see also https://github.com/EESSI/software-layer/issues/1175
    """

    if self.name == 'CMake':
        if is_system_toolchain(self.toolchain.name):
            self.log.info("Removing configure options that require ncurses static libraries...")
            self.log.info(f"Original configopts value: {self.cfg['configopts']}")
            regex = re.compile(r"-DCURSES_[A-Z]+_LIBRARY=\$EBROOTNCURSES/lib/lib[a-z]+\.a")
            self.cfg['configopts'] = regex.sub(self.cfg['configopts'], '')
            self.log.info(f"Updated configopts value: {self.cfg['configopts']}")
    else:
        raise EasyBuildError("CMake-specific hook triggered for non-CMake easyconfig?!")


def pre_configure_hook_Zoltan(self, *args, **kwargs):
    """
    Pre-configure hook for Zoltan to filter out ParMETIS configure options,
    since we filter out ParMETIS as a dependency
    """
    if self.name == 'Zoltan':
        if get_software_root('ParMETIS') is None:
            configopts = self.cfg['configopts']
            # get rid of all --with-parmetis configure options, and inject --without-parmetis
            configopts = re.sub('--with-parmetis[^ ]*', '', configopts)
            configopts += " --without-parmetis"
            self.cfg['configopts'] = configopts
            self.log.info("Removed --with-parmetis* configure options for {self.name}, ParMETIS is not a dependency")
    else:
        raise EasyBuildError("Zoltan-specific hook triggered for non-Zoltan easyconfig?!")


def pre_test_hook(self, *args, **kwargs):
    """Main pre-test hook: trigger custom functions based on software name."""
    if self.name in PRE_TEST_HOOKS:
        PRE_TEST_HOOKS[self.name](self, *args, **kwargs)


def pre_test_hook_exclude_failing_test_Highway(self, *args, **kwargs):
    """
    Pre-test hook for Highway: exclude failing TestAllShiftRightLanes/SVE_256 test on neoverse_v1
    cfr. https://github.com/EESSI/software-layer/issues/469
    and exclude failing tests
      HwyReductionTestGroup/HwyReductionTest.TestAllSumOfLanes/SVE2_128
      HwyReductionTestGroup/HwyReductionTest.TestAllSumOfLanes/SVE2
      HwyReductionTestGroup/HwyReductionTest.TestAllSumOfLanes/SVE
    on nvidia/grace
    """
    cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
    if self.name == 'Highway' and self.version in ['1.0.3'] and cpu_target == CPU_TARGET_NEOVERSE_V1:
        self.cfg['runtest'] += ' ARGS="-E TestAllShiftRightLanes/SVE_256"'
    if self.name == 'Highway' and self.version in ['1.0.3'] and cpu_target == CPU_TARGET_NVIDIA_GRACE:
        self.cfg['runtest'] += ' ARGS="-E TestAllSumOfLanes"'


def pre_test_hook_gromacs(self, *args, **kwargs):
    """
    Solve GROMACS test failure on NVIDIA Grace CPUs when hwloc support is enabled.
    """
    cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
    if self.name == 'GROMACS':
        if self.version < '2026.3' and cpu_target == CPU_TARGET_NVIDIA_GRACE:
            self.cfg['pretestopts'] = 'export HWLOC_KEEP_NVIDIA_GPU_NUMA_NODES=0 && '
    else:
        raise EasyBuildError("GROMACS-specific hook triggered for non-GROMACS easyconfig?!")


def pre_test_hook_ignore_failing_tests_ESPResSo(self, *args, **kwargs):
    """
    Pre-test hook for ESPResSo: skip failing tests, tests frequently timeout due to known bugs in ESPResSo v4.2.1
    cfr. https://github.com/EESSI/software-layer/issues/363
    """
    if self.name == 'ESPResSo' and self.version == '4.2.1':
        self.cfg['testopts'] = "|| echo 'ignoring failing tests (probably due to timeouts)'"


def pre_test_hook_ignore_failing_tests_FFTWMPI(self, *args, **kwargs):
    """
    Pre-test hook for FFTW.MPI: skip failing tests for FFTW.MPI 3.3.10 on neoverse_v1
    cfr. https://github.com/EESSI/software-layer/issues/325
    """
    cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
    if self.name == 'FFTW.MPI' and self.version == '3.3.10' and cpu_target == CPU_TARGET_NEOVERSE_V1:
        self.cfg['testopts'] = "|| echo ignoring failing tests"


def pre_test_hook_lammps_ignore_failure_arm_generic(self, *args, **kwargs):
    """
    Ignore failing tests on ARM generic target for LAMMPS version 22Jul2025
    """
    # Ignore failing ctest for LAMMPS/22Jul2025 on aarch64/generic
    cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
    if cpu_target == CPU_TARGET_AARCH64_GENERIC:
        if self.name == 'LAMMPS' and self.version == '22Jul2025':
            # This command matches what is in
            # https://github.com/easybuilders/easybuild-easyblocks/blob/71b010288084e1777fbdd0e3db319f0104134b1d/easybuild/easyblocks/l/lammps.py#L682
            # If a test_cmd is already defined, the easyblock linked above should not overwrite it anymore
            test_cmd = 'ctest '
            test_cmd += '--no-tests=error '
            test_cmd += '-LE unstable -E "TestMliapPyUnified|AtomicPairStyle:meam_spline|KSpaceStyle:scafacos.*" '
            test_cmd += f' || echo "Ignoring failing tests when installing for {cpu_target}"'
            self.log.debug(f"Running tests using test_cmd = '{test_cmd}' as test_cmd")
            self.cfg['test_cmd'] = test_cmd


def pre_test_hook_ignore_failing_tests_SciPybundle(self, *args, **kwargs):
    """
    Pre-test hook for SciPy-bundle: skip failing tests for selected SciPy-bundle versions
    In version 2021.10 on neoverse_v1, 2 failing tests in scipy 1.6.3:
        FAILED optimize/tests/test_linprog.py::TestLinprogIPSparse::test_bug_6139 - A...
        FAILED optimize/tests/test_linprog.py::TestLinprogIPSparsePresolve::test_bug_6139
        = 2 failed, 30554 passed, 2064 skipped, 10992 deselected, 76 xfailed, 7 xpassed, 40 warnings in 380.27s (0:06:20) =
    In versions 2023.02 + 2023.07 + 2023.11 + 2024.05 on neoverse_v1, 2 failing tests in scipy (versions 1.10.1, 1.11.1,
    1.11.4, 1.13.1):
        FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris
        FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris_float32
        = 2 failed, 54409 passed, 3016 skipped, 223 xfailed, 13 xpassed, 10917 warnings in 892.04s (0:14:52) =
    In version 2023.02 + 2023.07 on a64fx, 4 failing tests in scipy (version 1.10.1, 1.11.1):
        FAILED scipy/optimize/tests/test_linprog.py::TestLinprogIPSparse::test_bug_6139
        FAILED scipy/optimize/tests/test_linprog.py::TestLinprogIPSparsePresolve::test_bug_6139
        FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris
        FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris_float32
        = 4 failed, 54407 passed, 3016 skipped, 223 xfailed, 13 xpassed, 10917 warnings in 6068.43s (1:41:08) =
    In version 2024.05 on a64fx, 3 failing tests in scipy (version 1.13.1):
        FAILED scipy/optimize/tests/test_minimize_constrained.py::TestTrustRegionConstr::test_list_of_problems
        FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris
        FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris_float32
        = 3 failed, 61426 passed, 2620 skipped, 244 xfailed, 15 xpassed, 47 warnings in 6641.17s (1:50:41) =
    In version 2023.07 + 2023.11 on grace, 2 failing tests in scipy (versions 1.11.1,  1.11.4):
        FAILED scipy/optimize/tests/test_linprog.py::TestLinprogIPSparse::test_bug_6139
        FAILED scipy/optimize/tests/test_linprog.py::TestLinprogIPSparsePresolve::test_bug_6139
        = 2 failed, 54876 passed, 3021 skipped, 223 xfailed, 13 xpassed in 581.85s (0:09:41) =
    In version 2023.02 on grace, 46 failing tests in scipy (versions 1.10.1):
        FAILED ../../linalg/tests/test_basic.py::TestOverwrite::test_pinv - RuntimeWa...
        FAILED ../../linalg/tests/test_basic.py::TestOverwrite::test_pinvh - RuntimeW...
        FAILED ../../linalg/tests/test_matfuncs.py::TestExpM::test_2x2_input - Runtim...
        FAILED ../../optimize/tests/test_linprog.py::TestLinprogIPSparse::test_bug_6139
        FAILED ../../optimize/tests/test_linprog.py::TestLinprogIPSparsePresolve::test_bug_6139
        FAILED ../../optimize/tests/test_zeros.py::test_gh_9608_preserve_array_shape
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-True-coo_matrix-float32]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-False-array-float32]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-False-csr_matrix-float32]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-False-coo_matrix-float32]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-True-array-float32]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-True-csr_matrix-float32]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-True-coo_matrix-float32]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-True-array-float32]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-False-True-float32-asarray]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-False-array-float32]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-True-csr_matrix-float32]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-False-True-float32-csr_matrix]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-True-True-float32-asarray]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-True-True-float32-csr_matrix]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-False-True-float32-coo_matrix]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-False-csr_matrix-float32]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-True-True-float32-coo_matrix]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-False-True-float32-asarray]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-False-True-float32-asarray]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-False-True-float32-csr_matrix]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-False-True-float32-coo_matrix]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-False-coo_matrix-float32]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-False-True-float32-csr_matrix]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-False-True-float32-coo_matrix]
        FAILED ../../sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py::test_tolerance_float32
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-True-True-float32-asarray]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-False-True-float32-asarray]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-False-True-float32-csr_matrix]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-False-True-float32-coo_matrix]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-True-True-float32-csr_matrix]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-True-True-float32-coo_matrix]
        FAILED ../../sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py::test_random_initial_float32
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-True-True-float32-asarray]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-True-True-float32-csr_matrix]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-True-True-float32-coo_matrix]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-True-True-float32-asarray]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-True-True-float32-csr_matrix]
        FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-True-True-float32-coo_matrix]
        FAILED ../../sparse/linalg/_isolve/tests/test_iterative.py::test_precond_dummy
        FAILED ../../sparse/linalg/_eigen/arpack/tests/test_arpack.py::test_symmetric_modes
        = 46 failed, 49971 passed, 2471 skipped, 231 xfailed, 11 xpassed in 65.91s (0:01:05) =
    (in previous versions we were not as strict yet on the numpy/SciPy tests)
    """
    cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
    scipy_bundle_versions_nv1 = ('2021.10', '2023.02', '2023.07', '2023.11', '2024.05')
    scipy_bundle_versions_a64fx = ('2023.02', '2023.07', '2023.11', '2024.05')
    scipy_bundle_versions_nvidia_grace = ('2023.02', '2023.07', '2023.11')
    if self.name == 'SciPy-bundle':
        if cpu_target == CPU_TARGET_NEOVERSE_V1 and self.version in scipy_bundle_versions_nv1:
            self.cfg['testopts'] = "|| echo ignoring failing tests"
        elif cpu_target == CPU_TARGET_A64FX and self.version in scipy_bundle_versions_a64fx:
            self.cfg['testopts'] = "|| echo ignoring failing tests"
        elif cpu_target == CPU_TARGET_NVIDIA_GRACE and self.version in scipy_bundle_versions_nvidia_grace:
            self.cfg['testopts'] = "|| echo ignoring failing tests"


def pre_test_hook_ignore_failing_tests_netCDF(self, *args, **kwargs):
    """
    Pre-test hook for netCDF: skip failing tests for selected netCDF versions on neoverse_v1
    cfr. https://github.com/EESSI/software-layer/issues/425
    The following tests are problematic:
        163 - nc_test4_run_par_test (Timeout)
        190 - h5_test_run_par_tests (Timeout)
    A few other tests are skipped in the easyconfig and patches for similar issues, see above issue for details.
    """
    cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
    if self.name == 'netCDF' and self.version == '4.9.2' and cpu_target == CPU_TARGET_NEOVERSE_V1:
        self.cfg['testopts'] = "|| echo ignoring failing tests"


def pre_test_hook_increase_max_failed_tests_arm_PyTorch(self, *args, **kwargs):
    """
    Pre-test hook for PyTorch: increase the number of max failing tests
    See https://github.com/EESSI/software-layer/issues/461
    """
    cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
    if self.name == 'PyTorch' and self.version == '2.1.2':
        if get_cpu_architecture() == AARCH64:
            self.cfg['max_failed_tests'] = 10
        if cpu_target in [CPU_TARGET_CASCADELAKE, CPU_TARGET_ICELAKE, CPU_TARGET_SAPPHIRE_RAPIDS]:
            self.cfg['max_failed_tests'] = 4


def pre_test_hook_ignore_failing_tests_OpenBabel_a64fx(self, *args, **kwargs):
    """
    Pre-test hook for OpenBabel: skip timeout tests for OpenBabel 3.1.1 on aarch64/a64fx
    see https://github.com/EESSI/software-layer/pull/1332#issuecomment-3877255228
    the `testroundtrip.py` test reads and writes tens of thousands of small files.
    The test works fine when manually ran with EESSI-extend either directly or inside an eessi_container, but
    consistently fails with the bot
    """
    cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
    if self.name == 'OpenBabel' and self.version == '3.1.1' and cpu_target == CPU_TARGET_A64FX:
        self.cfg['testopts'] = "|| echo ignoring failing tests"


def pre_test_hook_Siesta_ignore_failure_with_crosscompilation(self, *args, **kwargs):
    """
    Ignore failing tests when crosscompiling without gpu present.
    """
    if self.name == 'Siesta': 
        if self.version in ['5.4.2']:
            if 'CUDA' in self.cfg['versionsuffix']: 
                cuda_cc = build_option('cuda_compute_capabilities')
                if cuda_cc and not get_gpu_info():
                    failing_tests=[
                        "Solvers-si-qdot-elsi-elpa-gpu_mpi4_omp1", # runs cuda get device
                        "Solvers-si-qdot-elsi-elpa-1stage-gpu_mpi4_omp1", # runs cuda get device
                        "Solvers-si-qdot-elpa-native-gpu_mpi4_omp1", # runs cuda get device
                        "Solvers-si-qdot-elpa-native-1stage-gpu_mpi4_omp1", # runs cuda get device
                    ]
                    extra_testopts = "|".join(failing_tests)
                    testopts = self.cfg['testopts']
                    self.cfg['testopts'] = re.sub(r"-E '(.*)'", rf"-E '\1|{extra_testopts}'", testopts)


def pre_single_extension_hook(ext, *args, **kwargs):
    """Main pre-extension: trigger custom functions based on software name."""
    if ext.name in PRE_SINGLE_EXTENSION_HOOKS:
        PRE_SINGLE_EXTENSION_HOOKS[ext.name](ext, *args, **kwargs)


def post_single_extension_hook(ext, *args, **kwargs):
    """Main post-extension hook: trigger custom functions based on software name."""
    if ext.name in POST_SINGLE_EXTENSION_HOOKS:
        POST_SINGLE_EXTENSION_HOOKS[ext.name](ext, *args, **kwargs)


def pre_single_extension_isoband(ext, *args, **kwargs):
    """
    Pre-extension hook for isoband R package, to fix build on top of recent glibc.
    """
    if ext.name == 'isoband' and LooseVersion(ext.version) < LooseVersion('0.2.5'):
        # use constant value instead of SIGSTKSZ for stack size in vendored testthat included in isoband sources,
        # cfr. https://github.com/r-lib/isoband/commit/6984e6ce8d977f06e0b5ff73f5d88e5c9a44c027
        ext.cfg['preinstallopts'] = "sed -i 's/SIGSTKSZ/32768/g' src/testthat/vendor/catch.h && "


def pre_single_extension_numpy(ext, *args, **kwargs):
    """
    Pre-extension hook for numpy:
      - change -march=native to -march=armv8.4-a for numpy 1.24.2 when building for aarch64/neoverse_v1 CPU target
      - change -march=native to -march=armv8.2-a for numpy 1.24.2 when building for aarch64/a64fx CPU target
    """
    cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
    if ext.name == 'numpy' and ext.version == '1.24.2':
        # note: this hook is called before build environment is set up (by calling toolchain.prepare()),
        # so environment variables like $CFLAGS are not defined yet
        # unsure which of these actually matter for numpy, so changing all of them
        if cpu_target == CPU_TARGET_NEOVERSE_V1:
            ext.orig_optarch = build_option('optarch')
            update_build_option('optarch', 'march=armv8.4-a')
        if cpu_target == CPU_TARGET_A64FX:
            ext.orig_optarch = build_option('optarch')
            update_build_option('optarch', 'march=armv8.2-a')


def post_single_extension_numpy(ext, *args, **kwargs):
    """
    Post-extension hook for numpy, to reset 'optarch' build option.
    """
    cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
    if ext.name == 'numpy' and ext.version == '1.24.2' and cpu_target in [CPU_TARGET_A64FX, CPU_TARGET_NEOVERSE_V1]:
        update_build_option('optarch', ext.orig_optarch)


def pre_single_extension_testthat(ext, *args, **kwargs):
    """
    Pre-extension hook for testthat R package, to fix build on top of recent glibc.
    """
    if ext.name == 'testthat' and LooseVersion(ext.version) < LooseVersion('3.1.0'):
        # use constant value instead of SIGSTKSZ for stack size,
        # cfr. https://github.com/r-lib/testthat/issues/1373 + https://github.com/r-lib/testthat/pull/1403
        ext.cfg['preinstallopts'] = "sed -i 's/SIGSTKSZ/32768/g' inst/include/testthat/vendor/catch.h && "


def post_postproc_hook(self, *args, **kwargs):
    """Main post-postprocessing hook: trigger custom functions based on software name."""
    if self.name in POST_POSTPROC_HOOKS:
        POST_POSTPROC_HOOKS[self.name](self, *args, **kwargs)


def post_postproc_cuda(self, *args, **kwargs):
    """
    Remove files from CUDA installation that we are not allowed to ship,
    and replace them with a symlink to a corresponding installation under host_injections.
    """
    if self.name == 'CUDA':
        # This hook only acts on an installation under repositories that _we_ ship (*.eessi.io/versions)
        eessi_installation = bool(re.search(EESSI_INSTALLATION_REGEX, self.installdir))

        if eessi_installation:
            print_msg("Replacing files in CUDA installation that we can not ship with symlinks to host_injections...")

            # read CUDA EULA, construct allowlist based on section 2.6 that specifies list of files that can be shipped
            eula_path = os.path.join(self.installdir, 'EULA.txt')
            relevant_eula_lines = []
            with open(eula_path) as infile:
                copy = False
                for line in infile:
                    if line.strip() == "2.6. Attachment A":
                        copy = True
                        continue
                    elif line.strip() == "2.7. Attachment B":
                        copy = False
                        continue
                    elif copy:
                        relevant_eula_lines.append(line)

            # create list without file extensions, they're not really needed and they only complicate things
            allowlist = ['EULA', 'README']
            file_extensions = ['.so', '.a', '.h', '.bc']
            for line in relevant_eula_lines:
                for word in line.split():
                    if any(ext in word for ext in file_extensions):
                        allowlist.append(os.path.splitext(word)[0])
            # The EULA of CUDA 12.4 introduced a typo (confirmed by NVIDIA):
            # libnvrtx-builtins_static.so should be libnvrtc-builtins_static.so
            if 'libnvrtx-builtins_static' in allowlist:
                allowlist.remove('libnvrtx-builtins_static')
                allowlist.append('libnvrtc-builtins_static')
            allowlist = sorted(set(allowlist))
            self.log.info(
                "Allowlist for files in CUDA installation that can be redistributed: " + ', '.join(allowlist)
                )

            # Do some quick sanity checks for things we should or shouldn't have in the list
            if 'nvcc' in allowlist:
                raise EasyBuildError("Found 'nvcc' in allowlist: %s" % allowlist)
            if 'libcudart' not in allowlist:
                raise EasyBuildError("Did not find 'libcudart' in allowlist: %s" % allowlist)

            # replace files that are not distributable with symlinks into
            # host_injections
            replace_binary_non_distributable_files_with_symlinks(self.log, self.installdir, self.name, allowlist)
        else:
            print_msg(f"EESSI hook to respect CUDA license not triggered for installation path {self.installdir}")
    else:
        raise EasyBuildError("CUDA-specific hook triggered for non-CUDA easyconfig?!")


def post_postproc_cudnn(self, *args, **kwargs):
    """
    Remove files from cuDNN installation that we are not allowed to ship,
    and replace them with a symlink to a corresponding installation under host_injections.
    """

    if self.name == 'cuDNN':
        # This hook only acts on an installation under repositories that _we_ ship (*.eessi.io/versions)
        eessi_installation = bool(re.search(EESSI_INSTALLATION_REGEX, self.installdir))

        if eessi_installation:
            print_msg("Replacing files in cuDNN installation that we can not ship with symlinks to host_injections...")

            allowlist = ['LICENSE']

            # read cuDNN LICENSE, construct allowlist based on section "2. Distribution" that specifies list of files that can be shipped
            license_path = os.path.join(self.installdir, 'LICENSE')
            search_string = "2. Distribution. The following portions of the SDK are distributable under the Agreement:"
            found_search_string = False
            with open(license_path) as infile:
                for line in infile:
                    if line.strip().startswith(search_string):
                        found_search_string = True
                        # remove search string, split into words, remove trailing
                        # dots '.' and only retain words starting with a dot '.'
                        distributable = line[len(search_string):]
                        # distributable looks like ' the runtime files .so and .dll.'
                        # note the '.' after '.dll'
                        for word in distributable.split():
                            if word[0] == '.':
                                # rstrip is used to remove the '.' after '.dll'
                                allowlist.append(word.rstrip('.'))
            if not found_search_string:
                # search string wasn't found in LICENSE file
                raise EasyBuildError("search string '%s' was not found in license file '%s';"
                                     "hence installation may be replaced by symlinks only",
                                     search_string, license_path)

            allowlist = sorted(set(allowlist))
            self.log.info("Allowlist for files in cuDNN installation that can be redistributed: " + ', '.join(allowlist))

            # replace files that are not distributable with symlinks into
            # host_injections
            replace_binary_non_distributable_files_with_symlinks(self.log, self.installdir, self.name, allowlist)
        else:
            print_msg(f"EESSI hook to respect cuDDN license not triggered for installation path {self.installdir}")
    else:
        raise EasyBuildError("cuDNN-specific hook triggered for non-cuDNN easyconfig?!")


def replace_binary_non_distributable_files_with_symlinks(log, install_dir, pkg_name, allowlist):
    """
    Replace files that cannot be distributed with symlinks into host_injections
    Since these are binary files, only the CPU family will be included in the prefix,
    no microarchitecture or accelerator architecture will be included. For example,
    /cvmfs/software.eessi.io/host_injections/x86_64/suffix/to/actual/file
    """
    # Different packages use different ways to specify which files or file
    # 'types' may be redistributed. For CUDA, the 'EULA.txt' lists full file
    # names. For cuDNN, the 'LICENSE' lists file endings/suffixes (e.g., '.so')
    # that can be redistributed.
    # The map 'extension_based' defines which of these two ways are employed. If
    # full file names are used it maps a package name (key) to False (value). If
    # endings/suffixes are used, it maps a package name to True. Later we can
    # easily use this data structure to employ the correct method for
    # postprocessing an installation.
    extension_based = {
        "CUDA": False,
        "cuDNN": True,
    }
    if not pkg_name in extension_based:
        raise EasyBuildError("Don't know how to strip non-distributable files from package %s.", pkg_name)

    # iterate over all files in the package installation directory
    for dir_path, _, files in os.walk(install_dir):
        for filename in files:
            full_path = os.path.join(dir_path, filename)
            # we only really care about real files, i.e. not symlinks
            if not os.path.islink(full_path):
                check_by_extension = extension_based[pkg_name] and '.' in filename
                if check_by_extension:
                    # if the allowlist only contains extensions, we have to
                    # determine that from filename. we assume the extension is
                    # the second element when splitting the filename at dots
                    # (e.g., for 'libcudnn_adv_infer.so.8.9.2' the extension
                    # would be '.so')
                    extension = '.' + filename.split('.')[1]
                # check if the current file name stub or its extension is part of the allowlist
                basename =  filename.split('.')[0]
                if basename in allowlist:
                    log.debug("%s is found in allowlist, so keeping it: %s", basename, full_path)
                elif check_by_extension and extension in allowlist:
                    log.debug("%s is found in allowlist, so keeping it: %s", extension, full_path)
                else:
                    print_name = filename if extension_based[pkg_name] else basename
                    log.debug("%s is not found in allowlist, so replacing it with symlink: %s",
                              print_name, full_path)
                    # the host_injections path is under a fixed repo/location for CUDA or cuDNN
                    # full_path is something similar to
                    # /cvmfs/software.eessi.io/version/.../x86_64/amd/zen4/accel/nvidia/cc90/.../CUDA/bin/nvcc
                    # host_inj_path will then be
                    # /cvmfs/software.eessi.io/host_injections/.../x86_64/amd/zen4/accel/nvidia/cc90/.../CUDA/bin/nvcc
                    host_inj_path = re.sub(EESSI_INSTALLATION_REGEX, HOST_INJECTIONS_LOCATION, full_path)
                    # CUDA and cu* libraries themselves don't care about compute capability so remove this
                    # duplication from under host_injections (symlink to a single CUDA or cu* library
                    # installation for all compute capabilities)
                    accel_subdir = get_eessi_envvar("EESSI_ACCELERATOR_TARGET")
                    # If accel_subdir is defined, remove it from the full path
                    # After removal of accel_subdir, host_inj_path will be something like
                    # /cvmfs/software.eessi.io/host_injections/.../x86_64/amd/zen4/.../CUDA/bin/nvcc
                    if accel_subdir:
                        host_inj_path = host_inj_path.replace(accel_subdir, '')
                    software_subdir = get_eessi_envvar("EESSI_SOFTWARE_SUBDIR")
                    cpu_family = get_eessi_envvar("EESSI_CPU_FAMILY")
                    os_type = get_eessi_envvar("EESSI_OS_TYPE")
                    eessi_version = get_eessi_envvar("EESSI_VERSION")
                    if software_subdir and cpu_family and os_type and eessi_version:
                        # Compose the string to be removed:
                        partial_path = f"{eessi_version}/software/{os_type}/{software_subdir}"
                        # After this, host_inj_path will be e.g.
                        # /cvmfs/software.eessi.io/host_injections/x86_64/software/CUDA/bin/nvcc
                        host_inj_path = host_inj_path.replace(partial_path, cpu_family)
                    else:
                        msg = "Failed to construct path to symlink for file (%s). All of the following values "
                        msg += "have to be defined: EESSI_SOFTWARE_SUBDIR='%s', EESSI_CPU_FAMILY='%s', "
                        msg += "EESSI_OS_TYPE='%s', EESSI_VERSION='%s'. Failed to replace non-redistributable file "
                        msg += "with symlink, aborting..."
                        raise EasyBuildError(msg, full_path, software_subdir, cpu_family, os_type, eessi_version)

                    # make sure source and target of symlink are not the same
                    if full_path == host_inj_path:
                        raise EasyBuildError("Source (%s) and target (%s) are the same location, are you sure you "
                                             "are using this hook for an EESSI installation?",
                                             full_path, host_inj_path)
                    remove_file(full_path)
                    symlink(host_inj_path, full_path)


def find_rocm_llvm_dependency(ec):
    """
    Return the ROCm-LLVM dependency for this easyconfig, or None. ROCm-LLVM can
    be a direct dependency, a direct toolchain component (rocm-compilers as the
    toolchain), or one level deeper inside the rocm-compilers bundle when the
    toolchain is rompi/rfbf/rfoss.
    """
    # Check if ROCm-LLVM is a direct dependency, and if so, return that
    #
    for dep in ec.asdict()['dependencies']:
        # dep is a tuple (name, version, versionsuffix, toolchain); normalise it to the
        # same dict format as ec.toolchain.tcdeps entries before returning
        if dep[0] == 'ROCm-LLVM':
            return {
                'name': dep[0],
                'version': dep[1],
                'versionsuffix': dep[2] if len(dep) > 2 else '',
                'toolchain': dep[3] if len(dep) > 3 else None,
            }

    # ROCm-LLVM can also be part of the toolchain. First, return early if this is NOT a ROCm-based toolchain
    if ec['toolchain']['name'] not in ('rocm-compilers', 'rompi', 'rfbf', 'rfoss'):
        return None

    tcdeps = ec.toolchain.tcdeps or []
    # Check if ROCm-LLVM is a direct dependency for this toolchain (which would be the case for rocm-compilers)
    for dep in tcdeps:
        if dep['name'] == 'ROCm-LLVM':
            return dep
    # For rompi, rfbf, rfoss, ROCm-LLVM is pulled in indirectly via rocm-compilers. the rocm-compilers 
    # toolchain dependency already encodes the ROCm version in its version string (e.g. '19.0.0-ROCm-6.4.1')
    rocm_prefix = '-ROCm-'
    for dep in tcdeps:
        if dep['name'] == 'rocm-compilers':
            full_version = dep['version'] + dep.get('versionsuffix', '')
            if rocm_prefix in full_version:
                version, rocm_version = full_version.split(rocm_prefix, 1)
                return {
                    'name': dep['name'],
                    'version': version,
                    'versionsuffix': rocm_prefix + rocm_version,
                }

    return None


def inject_gpu_property(ec):
    """
    Add 'gpu' property and EESSI<PACKAGE>VERSION envvars via modluafooter
    easyconfig parameter, and drop dependencies to build dependencies
    """
    ec_dict = ec.asdict()
    pkg_versions = { }
    add_gpu_property = ''

    # Check if pkg_name is related to CUDA, if so drop dependency to build
    # dependency and set variable for later adding the 'gpu' Lmod property
    # to '.remove' dependencies from ec_dict['dependencies'] we make a copy,
    # iterate over the copy and can then savely use '.remove' on the original
    # ec_dict['dependencies'].
    for pkg_name in ('CUDA', 'cuDNN'):
        for dep in ec_dict['dependencies'][:]:
            if dep[0] != pkg_name:
                continue

            add_gpu_property = 'add_property("arch","gpu")'
            pkg_versions[pkg_name] = dep[1]

            ec.log.info("Dropping dependency on %s to build dependency" % pkg_name)
            ec_dict['dependencies'].remove(dep)
            if dep not in ec_dict['builddependencies']:
                ec_dict['builddependencies'].append(dep)

    # ROCm-LLVM is handled separately: it is redistributable (kept as a runtime dep)
    # and may be pulled in via a ROCm toolchain rather than as a direct dependency.
    rocm_llvm_dep = find_rocm_llvm_dependency(ec)
    if rocm_llvm_dep is not None:
        add_gpu_property = 'add_property("arch","gpu")'
        versionsuffix = rocm_llvm_dep['versionsuffix']
        rocm_prefix = "-ROCm-"

        if versionsuffix.startswith(rocm_prefix):
            rocm_version = versionsuffix[len(rocm_prefix):]
        else:
            raise EasyBuildError(f"Invalid format for ROCm versionssuffix: {versionsuffix}")
        pkg_versions['ROCm'] = rocm_version

    if add_gpu_property:
        ec.log.info("Injecting gpu as Lmod arch property and envvars for dependencies with their version")
        modluafooter = 'modluafooter'
        extra_mod_footer_lines = [add_gpu_property]
        for pkg_name, version in pkg_versions.items():
            envvar = "EESSI%sVERSION" % pkg_name.upper()
            extra_mod_footer_lines.append('setenv("%s","%s")' % (envvar, version))
        # take into account that modluafooter may already be set
        if modluafooter in ec_dict:
            value = ec_dict[modluafooter]
            for line in extra_mod_footer_lines:
                if not line in value:
                    value = '\n'.join([value, line])
            ec[modluafooter] = value
        else:
            ec[modluafooter] = '\n'.join(extra_mod_footer_lines)

    return ec


def pre_module_hook(self, *args, **kwargs):
    """Main pre module hook: trigger custom functions based on software name."""
    if self.name in PRE_MODULE_HOOKS:
        PRE_MODULE_HOOKS[self.name](self, *args, **kwargs)

    # Always trigger this one, regardless of self.name
    pre_module_hook_unsupported_module(self, *args, **kwargs)


def post_module_hook(self, *args, **kwargs):
    """Main post module hook: trigger custom functions based on software name."""
    if self.name in POST_MODULE_HOOKS:
        POST_MODULE_HOOKS[self.name](self, *args, **kwargs)

    # Always trigger this one, regardless of self.name
    post_module_hook_unsupported_module(self, *args, **kwargs)


# The post_easyblock_hook was introduced in EasyBuild 5.1.1.
# Older versions would fail if the function is defined anyway, as EasyBuild performs some checks on function names in hooks files.
if EASYBUILD_VERSION >= '5.1.1':
    def post_easyblock_hook(self, *args, **kwargs):
        """Main post easyblock hook: trigger custom functions based on software name."""
        if self.name in POST_EASYBLOCK_HOOKS:
            POST_EASYBLOCK_HOOKS[self.name](self, *args, **kwargs)

        # Always trigger this one for EESSI CVMFS/site installations and version 2025.06 or newer, regardless of self.name
        if os.getenv('EESSI_CVMFS_INSTALL') or os.getenv('EESSI_SITE_INSTALL'):
            if get_eessi_envvar('EESSI_VERSION') and LooseVersion(get_eessi_envvar('EESSI_VERSION')) >= '2025.06':
                post_easyblock_hook_copy_easybuild_subdir(self, *args, **kwargs)
        else:
            self.log.debug("No CVMFS/site installation requested, not running post_easyblock_hook_copy_easybuild_subdir.")
else:
    print_warning(f"Not enabling the post_easybuild_hook, as it requires EasyBuild 5.1.1 or newer (you are using {EASYBUILD_VERSION}).")


PARSE_HOOKS = {
    'casacore': parse_hook_casacore_disable_vectorize,
    'CGAL': parse_hook_cgal_toolchainopts_precise,
    'fontconfig': parse_hook_fontconfig_add_fonts,
    'FreeImage': parse_hook_freeimage_aarch64,
    'grpcio': parse_hook_grpcio_zlib,
    'maturin': parse_hook_maturin,
    'Mesa': parse_hook_mesa_use_llvm_minimal,
    'OpenBLAS': parse_hook_openblas_relax_lapack_tests_num_errors,
    'pybind11': parse_hook_pybind11_replace_catch2,
    'Qt5': parse_hook_qt5_check_qtwebengine_disable,
    'Qt6': parse_hook_qt6_libinput,
    'UCX': parse_hook_ucx_eprefix,
}

PRE_FETCH_HOOKS = {}

PRE_PREPARE_HOOKS = {
    'cuDNN': pre_prepare_hook_cudnn,
    'Highway': pre_prepare_hook_highway_handle_test_compilation_issues,
    'LAMMPS': pre_prepare_hook_LAMMPS_kokkos_CUDA_families,
    'LLVM': pre_prepare_hook_llvm_a64fx,
    'PyTorch': pre_prepare_hook_pytorch,
    'Rust': pre_prepare_hook_llvm_a64fx,
}

POST_PREPARE_HOOKS = {
    'GCCcore': post_prepare_hook_gcc_prefixed_ld_rpath_wrapper,
    'Highway': post_prepare_hook_highway_handle_test_compilation_issues,
    'LLVM': post_prepare_hook_llvm_a64fx,
    'Rust': post_prepare_hook_llvm_a64fx,
}

PRE_CONFIGURE_HOOKS = {
    'BLIS': pre_configure_hook_BLIS,
    'CMake': pre_configure_hook_cmake_system,
    'CUDA-Samples': pre_configure_hook_CUDA_Samples_test_remove,
    'Dyninst': pre_configure_hook_dyninst,
    'Extrae': pre_configure_hook_extrae,
    'GObject-Introspection': pre_configure_hook_gobject_introspection,
    'Graphviz': pre_configure_hook_graphviz,
    'GRASS': pre_configure_hook_grass,
    'LAMMPS': pre_configure_hook_LAMMPS_zen4_and_aarch64_cuda,
    'libfabric': pre_configure_hook_libfabric_disable_psm3_x86_64_generic,
    'LLVM': pre_configure_hook_llvm,
    'MetaBAT': pre_configure_hook_metabat_filtered_zlib_dep,
    'OpenBLAS': pre_configure_hook_openblas_optarch_generic,
    'OpenMPI': pre_configure_hook_openmpi_ipv6,
    'PMIx': pre_configure_hook_pmix_ipv6,
    'PRRTE': pre_configure_hook_prrte_ipv6,
    'ROCm-LLVM': pre_configure_hook_llvm,
    'Score-P': pre_configure_hook_score_p,
    'WRF': pre_configure_hook_wrf_aarch64,
    'Zoltan': pre_configure_hook_Zoltan,
}

PRE_TEST_HOOKS = {
    'ESPResSo': pre_test_hook_ignore_failing_tests_ESPResSo,
    'FFTW.MPI': pre_test_hook_ignore_failing_tests_FFTWMPI,
    'GROMACS': pre_test_hook_gromacs,
    'Highway': pre_test_hook_exclude_failing_test_Highway,
    'LAMMPS': pre_test_hook_lammps_ignore_failure_arm_generic,
    'SciPy-bundle': pre_test_hook_ignore_failing_tests_SciPybundle,
    'Siesta': pre_test_hook_Siesta_ignore_failure_with_crosscompilation,
    'netCDF': pre_test_hook_ignore_failing_tests_netCDF,
    'OpenBabel': pre_test_hook_ignore_failing_tests_OpenBabel_a64fx,
    'PyTorch': pre_test_hook_increase_max_failed_tests_arm_PyTorch,
}

PRE_SINGLE_EXTENSION_HOOKS = {
    'isoband': pre_single_extension_isoband,
    'numpy': pre_single_extension_numpy,
    'testthat': pre_single_extension_testthat,
}

POST_SINGLE_EXTENSION_HOOKS = {
    'numpy': post_single_extension_numpy,
}

POST_POSTPROC_HOOKS = {
    'CUDA': post_postproc_cuda,
    'cuDNN': post_postproc_cudnn,
}

PRE_MODULE_HOOKS = {}

POST_MODULE_HOOKS = {}

POST_EASYBLOCK_HOOKS = {}

# Define parallelism limit operations
def divide_by_factor(parallel, factor):
    """Divide parallelism by given factor"""
    return max(1, parallel // factor)

def set_maximum(parallel, max_value):
    """Set parallelism to maximum value"""
    return min(parallel, max_value)

# Data structure defining parallelism limits for different software and CPU targets
# Format: {software_name: {cpu_target: (operation_function, operation_args)}}
#         '*' for a CPU target means the operation applies to all CPU targets
# Information is processed in the post_ready_hook function. First it checks if the
# specific CPU target is defined in the data structure below. If not, it checks for
# the generic '*' entry.
PARALLELISM_LIMITS = {
    # by default, only use quarter of cores when building for A64FX;
    # this is done because total memory is typically limited on A64FX due to HBM,
    # Deucalion has 32GB HBM for 48 cores per node
    CPU_TARGET_A64FX: (divide_by_factor, 4),
    # software-specific limits
    'libxc': {
        '*': (divide_by_factor, 2),
        CPU_TARGET_A64FX: (set_maximum, 6),
    },
    'LLVM': {
        '*': (divide_by_factor, 2),
    },
    'MBX': {
        '*': (divide_by_factor, 2),
        CPU_TARGET_A64FX: (set_maximum, 1),
    },
    'QuantumESPRESSO': {
        CPU_TARGET_A64FX: (set_maximum, 6),
    },
    'TensorFlow': {
        '*': (divide_by_factor, 2),
        CPU_TARGET_A64FX: (set_maximum, 8),
    },
    'Qt5': {
        CPU_TARGET_A64FX: (set_maximum, 8),
    },
    'Qt6': {
        CPU_TARGET_A64FX: (set_maximum, 8),
        CPU_TARGET_AARCH64_GENERIC: (divide_by_factor, 2),
        CPU_TARGET_NEOVERSE_N1: (divide_by_factor, 2),
        CPU_TARGET_NEOVERSE_V1: (divide_by_factor, 2),
    },
    'ROCm-LLVM': {
        '*': (set_maximum, 12),
    },
    'jax': {
        '*': (divide_by_factor, 2),
    },
}