From 7347705998bed25a4adc71795f8f1edba54eb6b2 Mon Sep 17 00:00:00 2001
From: martenson <1814954+martenson@users.noreply.github.com>
Date: Wed, 3 Jun 2026 12:04:30 +0000
Subject: [PATCH] Update all tools of usegalaxy.cz

---
 usegalaxy.cz/dna_metabarcoding.yml.lock    |  5 ++++
 usegalaxy.cz/genome_diversity.yml.lock     |  1 +
 usegalaxy.cz/get_data.yml.lock             |  3 ++
 usegalaxy.cz/hicexplorer.yml.lock          | 35 ++++++++++++++++++++++
 usegalaxy.cz/machine_learning.yml.lock     |  5 ++++
 usegalaxy.cz/mapping.yml.lock              |  1 +
 usegalaxy.cz/metagenomic_analysis.yml.lock | 12 ++++++++
 usegalaxy.cz/nanopore.yml.lock             |  1 +
 usegalaxy.cz/phylogenetics.yml.lock        |  6 ++++
 usegalaxy.cz/proteomics.yml.lock           |  4 +++
 usegalaxy.cz/quality_control.yml.lock      |  1 +
 usegalaxy.cz/rna_analysis.yml.lock         |  2 ++
 usegalaxy.cz/single_cell.yml.lock          |  4 +++
 usegalaxy.cz/text_manipulation.yml.lock    |  2 ++
 usegalaxy.cz/variant_calling.yml.lock      |  3 ++
 15 files changed, 85 insertions(+)

diff --git a/usegalaxy.cz/dna_metabarcoding.yml.lock b/usegalaxy.cz/dna_metabarcoding.yml.lock
index c284b57..7d827b1 100644
--- a/usegalaxy.cz/dna_metabarcoding.yml.lock
+++ b/usegalaxy.cz/dna_metabarcoding.yml.lock
@@ -27,6 +27,7 @@ tools:
   owner: iuc
   revisions:
   - 374fd9feb032
+  - a86cb55cba33
   - deaac9e831a4
   - e328ced6cf0a
   tool_panel_section_id: dna_metabarcoding
@@ -36,6 +37,7 @@ tools:
   revisions:
   - 08d873cdd5f6
   - 12baadec7809
+  - 1beb31209adb
   - 816cbd8f4e6e
   - f5e899be558b
   tool_panel_section_id: dna_metabarcoding
@@ -43,6 +45,7 @@ tools:
 - name: obi_uniq
   owner: iuc
   revisions:
+  - 3cd66db293f6
   - 9eded74a3d03
   - d4bea99366f9
   - ec215ed98831
@@ -52,6 +55,7 @@ tools:
   owner: iuc
   revisions:
   - 02bab5ff7c37
+  - 7e68109625a3
   - 98bec443b342
   - be475ac055b2
   - fe7ec8a3d35e
@@ -60,6 +64,7 @@ tools:
 - name: obi_annotate
   owner: iuc
   revisions:
+  - 4da9a24971bd
   - c96ce8ed191c
   - d50dc96e3ce9
   - f82cefbbcea5
diff --git a/usegalaxy.cz/genome_diversity.yml.lock b/usegalaxy.cz/genome_diversity.yml.lock
index e9606b2..a82204c 100644
--- a/usegalaxy.cz/genome_diversity.yml.lock
+++ b/usegalaxy.cz/genome_diversity.yml.lock
@@ -20,6 +20,7 @@ tools:
   revisions:
   - 73a469f7dc96
   - b1e68bbe4cef
+  - dc97e1b45938
   - ea30d3089354
   tool_panel_section_id: genome_diversity
   tool_panel_section_label: Genome Diversity
diff --git a/usegalaxy.cz/get_data.yml.lock b/usegalaxy.cz/get_data.yml.lock
index 850a6a0..1b2c947 100644
--- a/usegalaxy.cz/get_data.yml.lock
+++ b/usegalaxy.cz/get_data.yml.lock
@@ -106,6 +106,7 @@ tools:
 - name: ncbi_eutils_elink
   owner: iuc
   revisions:
+  - 18e7b30a39aa
   - 2791c731fc65
   - bb5af69cf3f7
   tool_panel_section_id: get_data
@@ -115,6 +116,7 @@ tools:
   revisions:
   - 5b1dc5936af2
   - 6a0463d18db2
+  - cbddabc5c71a
   tool_panel_section_id: get_data
   tool_panel_section_label: Get Data
 - name: ncbi_eutils_esummary
@@ -215,6 +217,7 @@ tools:
   owner: iuc
   revisions:
   - 03a801ded645
+  - 07f675a7ac2e
   - 0f3b3813b6ae
   - 1e188c9610c3
   - 6ba50cbabbb7
diff --git a/usegalaxy.cz/hicexplorer.yml.lock b/usegalaxy.cz/hicexplorer.yml.lock
index 65f68b2..a325960 100644
--- a/usegalaxy.cz/hicexplorer.yml.lock
+++ b/usegalaxy.cz/hicexplorer.yml.lock
@@ -13,6 +13,7 @@ tools:
 - name: hicexplorer_chicplotviewpoint
   owner: bgruening
   revisions:
+  - 009ea872cdf5
   - 43c24d0bd463
   - '920526260066'
   tool_panel_section_id: hicexplorer
@@ -21,6 +22,7 @@ tools:
   owner: bgruening
   revisions:
   - 45828071edc3
+  - 7157e98ec11a
   - 9d878ac82c0f
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
@@ -28,6 +30,7 @@ tools:
   owner: bgruening
   revisions:
   - 1eae6fe69bbd
+  - 65fc9fc648f4
   - c3ffb2c1e314
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
@@ -35,6 +38,7 @@ tools:
   owner: bgruening
   revisions:
   - 6ef732512682
+  - e9cf8387e386
   - ff1af7bac1cb
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
@@ -42,6 +46,7 @@ tools:
   owner: bgruening
   revisions:
   - 37125838e360
+  - 90d52ca89318
   - fdcf45efac66
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
@@ -50,6 +55,7 @@ tools:
   revisions:
   - 7cdc1a2de16e
   - a10fce08c2dc
+  - bb9e080ae77b
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
 - name: hicexplorer_hicplotsvl
@@ -57,6 +63,7 @@ tools:
   revisions:
   - 1602cc5b673c
   - 279fb179dae7
+  - ff9f5d335041
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
 - name: hicexplorer_hicplotmatrix
@@ -64,18 +71,21 @@ tools:
   revisions:
   - 025a128652dc
   - 9939786dd9c9
+  - eb3a1b9a1c3c
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
 - name: hicexplorer_hicplotdistvscounts
   owner: bgruening
   revisions:
   - 89cfe7de541b
+  - 9f0578013f9b
   - a4a413dcc59d
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
 - name: hicexplorer_hicplotaverageregions
   owner: bgruening
   revisions:
+  - 16a8d1688c65
   - 3f1b286a5c34
   - f490a6409f3d
   tool_panel_section_id: hicexplorer
@@ -84,6 +94,7 @@ tools:
   owner: bgruening
   revisions:
   - 41dbf4d162a2
+  - b03f8b95b08c
   - f86ca478c6af
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
@@ -92,12 +103,14 @@ tools:
   revisions:
   - 478aacfbaa37
   - 5746d61f0a91
+  - 7b9fa42ca59c
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
 - name: hicexplorer_hicvalidatelocations
   owner: bgruening
   revisions:
   - 0ecdd41d707c
+  - 4060d361cf3c
   - d890828ab02a
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
@@ -106,12 +119,14 @@ tools:
   revisions:
   - 1d9799f4b854
   - 420868438a99
+  - 7f88b2b4662d
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
 - name: hicexplorer_hicdetectloops
   owner: bgruening
   revisions:
   - 0d6c2ff54c76
+  - 18bf75bf5d67
   - 4375e25de06a
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
@@ -119,12 +134,14 @@ tools:
   owner: bgruening
   revisions:
   - 0f5786ffa10d
+  - 5faa9d3839d0
   - bab2fa7355d9
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
 - name: hicexplorer_hiccompartmentspolarization
   owner: bgruening
   revisions:
+  - 4630448a0d88
   - 87eb9c58cd19
   - bd6e26c47853
   tool_panel_section_id: hicexplorer
@@ -133,12 +150,14 @@ tools:
   owner: bgruening
   revisions:
   - 5dd1aae12f03
+  - 6f078762ff7f
   - 826a6ac07f93
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
 - name: hicexplorer_hicaverageregions
   owner: bgruening
   revisions:
+  - 0ec8d77d1833
   - 3240e8a7c54f
   - b15d27c440fd
   tool_panel_section_id: hicexplorer
@@ -147,6 +166,7 @@ tools:
   owner: bgruening
   revisions:
   - 30677e95bc89
+  - 9c004f11ebe4
   - e30485c5e93b
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
@@ -154,6 +174,7 @@ tools:
   owner: bgruening
   revisions:
   - 937b7b9832d0
+  - c5ce0cbf73dc
   - f5a37c3906cc
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
@@ -162,12 +183,14 @@ tools:
   revisions:
   - 5e83c077e31d
   - 8ad23dfdaabb
+  - b1815cb2b298
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
 - name: hicexplorer_hictransform
   owner: bgruening
   revisions:
   - 21b3ef2a6a80
+  - a4b4bb07ed14
   - df64cc4dfb4d
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
@@ -175,6 +198,7 @@ tools:
   owner: bgruening
   revisions:
   - 2a57fc28ef3a
+  - 86958f9bec1b
   - d74cf4a61d65
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
@@ -182,12 +206,14 @@ tools:
   owner: bgruening
   revisions:
   - 4d511437b1e5
+  - 7011782fdbaf
   - 9d93c8fbe0a6
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
 - name: hicexplorer_hicconvertformat
   owner: bgruening
   revisions:
+  - 0d0c6092cc43
   - 2a24ce221cd7
   - 574f295b5ba4
   tool_panel_section_id: hicexplorer
@@ -195,6 +221,7 @@ tools:
 - name: hicexplorer_hicadjustmatrix
   owner: bgruening
   revisions:
+  - 733162fae8b0
   - aeacaf08bd52
   - e8760fc0e29b
   tool_panel_section_id: hicexplorer
@@ -202,6 +229,7 @@ tools:
 - name: hicexplorer_hicfindrestrictionsites
   owner: bgruening
   revisions:
+  - 430acc59e883
   - aa829050d061
   - f0b1bd38745a
   tool_panel_section_id: hicexplorer
@@ -209,6 +237,7 @@ tools:
 - name: hicexplorer_hicinfo
   owner: bgruening
   revisions:
+  - 58293f858e2d
   - 782e3ae92bc6
   - 7fbd6feba1ca
   tool_panel_section_id: hicexplorer
@@ -216,6 +245,7 @@ tools:
 - name: hicexplorer_hicquickqc
   owner: bgruening
   revisions:
+  - 0a134c0bdb39
   - 7679948176ef
   - b13e7a200525
   tool_panel_section_id: hicexplorer
@@ -225,11 +255,13 @@ tools:
   revisions:
   - 6f8debcf2ac9
   - b285586b61a6
+  - fdb67db6d500
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
 - name: hicexplorer_chicqualitycontrol
   owner: bgruening
   revisions:
+  - 853c072bbb11
   - f6a169b5e43b
   - fadd03fbc4f5
   tool_panel_section_id: hicexplorer
@@ -363,6 +395,7 @@ tools:
 - name: hicexplorer_hichyperoptdetectloops
   owner: bgruening
   revisions:
+  - 1fa29fabe773
   - 3e5c86c2f80d
   - 89fb1aab755b
   tool_panel_section_id: hicexplorer
@@ -371,6 +404,7 @@ tools:
   owner: bgruening
   revisions:
   - 4977f65da0ff
+  - 5b245b3ded3f
   - 608538d083a2
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
@@ -378,6 +412,7 @@ tools:
   owner: bgruening
   revisions:
   - 6f725a516914
+  - ee33791e32dc
   - febfddb0b3e8
   tool_panel_section_id: hicexplorer
   tool_panel_section_label: HiCExplorer
diff --git a/usegalaxy.cz/machine_learning.yml.lock b/usegalaxy.cz/machine_learning.yml.lock
index c9ce5a2..5e62980 100644
--- a/usegalaxy.cz/machine_learning.yml.lock
+++ b/usegalaxy.cz/machine_learning.yml.lock
@@ -37,6 +37,7 @@ tools:
 - name: sklearn_numeric_clustering
   owner: bgruening
   revisions:
+  - 1bdac8249aa1
   - 1dd433d2c92c
   - 27903ce9b4be
   - 37e193b3fdd7
@@ -100,6 +101,7 @@ tools:
   - 0630258dcf35
   - 153f237ddb36
   - 372582a7a34d
+  - 4aa3666b66fa
   - 4ed102b922cb
   - 61461e52c923
   - 80852884053f
@@ -396,6 +398,7 @@ tools:
   - 56f6ebf69ddc
   - 5d5d9cc554f9
   - 61e76fb65daf
+  - 7e5631773cea
   - 805194c3cdfb
   - 845dfafac355
   - 86e1e2874460
@@ -417,6 +420,7 @@ tools:
   - c2e2aa55dd5c
   - c374098d4f5c
   - da9f0b8ca61c
+  - e8694d796a7e
   - f5e6fb49e9ee
   tool_panel_section_id: machine_learning
   tool_panel_section_label: Machine Learning
@@ -457,6 +461,7 @@ tools:
   - 03533fa14e77
   - 1252578525d1
   - 305c1229ac99
+  - 3b8fa4ea9727
   - 61b2d8f8811e
   - 679e4ede1191
   - 9afec58b2bf9
diff --git a/usegalaxy.cz/mapping.yml.lock b/usegalaxy.cz/mapping.yml.lock
index 944775a..62b0268 100644
--- a/usegalaxy.cz/mapping.yml.lock
+++ b/usegalaxy.cz/mapping.yml.lock
@@ -88,6 +88,7 @@ tools:
   owner: iuc
   revisions:
   - 0e8330535ea0
+  - 6fe0fdd63a67
   - 7da532cd050c
   - 8fbd98f37c10
   - 95ab864b281a
diff --git a/usegalaxy.cz/metagenomic_analysis.yml.lock b/usegalaxy.cz/metagenomic_analysis.yml.lock
index 538e7da..e8dcce0 100644
--- a/usegalaxy.cz/metagenomic_analysis.yml.lock
+++ b/usegalaxy.cz/metagenomic_analysis.yml.lock
@@ -796,6 +796,7 @@ tools:
   owner: iuc
   revisions:
   - 4d8bc5dd9e95
+  - 7a5598f973c9
   - 989f1256d7a9
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
@@ -804,12 +805,14 @@ tools:
   revisions:
   - 505111e8aca5
   - 8b1b09fcd8b7
+  - d87b60b2ed78
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: concoct_merge_cut_up_clustering
   owner: iuc
   revisions:
   - 20ccec4a2c38
+  - 28b4b21d6aae
   - 794d4e27925b
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
@@ -1104,6 +1107,7 @@ tools:
   revisions:
   - 2e921a1efd45
   - 6b8580e02e99
+  - b0b7bba11507
   - bd518ee51da5
   - e9168eec404c
   tool_panel_section_id: metagenomic_analysis
@@ -1145,6 +1149,7 @@ tools:
   - 301a6ffaf2a2
   - ac3774320d28
   - dfb9413825cc
+  - e0b095891b28
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: ampvis2_heatmap
@@ -1152,6 +1157,7 @@ tools:
   revisions:
   - 16b4934fc7e7
   - 1979fdd0914f
+  - 3e5c1fdd0e45
   - 7c3248a397fd
   - c980e4bd48f2
   tool_panel_section_id: metagenomic_analysis
@@ -1170,6 +1176,7 @@ tools:
   owner: iuc
   revisions:
   - 028ba7c0b400
+  - 24f43b62a172
   - 35d71afa93f4
   - 378ce300fb3d
   - c7d03a7b52d6
@@ -1180,6 +1187,7 @@ tools:
   revisions:
   - 0e10df6f37c6
   - 414355492c32
+  - 77f9ed2bb200
   - c9143bcb2072
   - f34ea612eecf
   tool_panel_section_id: metagenomic_analysis
@@ -1210,6 +1218,7 @@ tools:
   - 354d645455cd
   - 37a617dca128
   - 7822d7a5a496
+  - a9fd4ada4d2a
   - bb054c50a96c
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
@@ -1217,6 +1226,7 @@ tools:
   owner: iuc
   revisions:
   - 2c21c267391c
+  - 4140e26cafbc
   - c5ccc28a2696
   - cf0944377d87
   - e913a155618b
@@ -1246,6 +1256,7 @@ tools:
   owner: iuc
   revisions:
   - 14b38ec15fe9
+  - 492eb6dcfe5c
   - b268ffb0e321
   - ef800b2766c4
   - ff07f41b8e54
@@ -1470,6 +1481,7 @@ tools:
 - name: kegg_pathways_completeness
   owner: iuc
   revisions:
+  - 78990897aa94
   - 9933e2f91584
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
diff --git a/usegalaxy.cz/nanopore.yml.lock b/usegalaxy.cz/nanopore.yml.lock
index 11c54be..d3f4bf8 100644
--- a/usegalaxy.cz/nanopore.yml.lock
+++ b/usegalaxy.cz/nanopore.yml.lock
@@ -63,6 +63,7 @@ tools:
   - 025139097795
   - 0f1c34698076
   - 2a9afed42353
+  - 640e4eeab4e2
   - 9eab750c367d
   - a02b8b3f5a0c
   - a3c4fe6f49ab
diff --git a/usegalaxy.cz/phylogenetics.yml.lock b/usegalaxy.cz/phylogenetics.yml.lock
index 8622de5..36d848f 100644
--- a/usegalaxy.cz/phylogenetics.yml.lock
+++ b/usegalaxy.cz/phylogenetics.yml.lock
@@ -165,6 +165,7 @@ tools:
   owner: iuc
   revisions:
   - b1e68bbe4cef
+  - dc97e1b45938
   - ea30d3089354
   tool_panel_section_id: phylogenetics
   tool_panel_section_label: Phylogenetics
@@ -173,6 +174,7 @@ tools:
   revisions:
   - 4340eef6ec1b
   - 7e11a7f4bdba
+  - 8cff16cf17a8
   - 9c62ad7dd113
   - dbe37a658cd2
   - e8e75a79de59
@@ -206,6 +208,7 @@ tools:
   revisions:
   - 07f5b2c5ac10
   - 4b3ef9bde528
+  - 6f9566d5a509
   - dbc49bd1a3e9
   - f9e418125021
   tool_panel_section_id: phylogenetics
@@ -221,6 +224,7 @@ tools:
 - name: gafa
   owner: earlhaminst
   revisions:
+  - 38b0685e442a
   - af9f72ddf7f9
   - b9f1bcf5ee59
   - c22276db4025
@@ -232,6 +236,7 @@ tools:
   - 1d2de27d7a9c
   - 4a233271d05a
   - 4d60b0cd146c
+  - e2a69a5aeb7e
   tool_panel_section_id: phylogenetics
   tool_panel_section_label: Phylogenetics
 - name: blast_parser
@@ -239,6 +244,7 @@ tools:
   revisions:
   - 363f3480622d
   - 376ed15e0d27
+  - f10c4abc0ab3
   - fea757b85172
   tool_panel_section_id: phylogenetics
   tool_panel_section_label: Phylogenetics
diff --git a/usegalaxy.cz/proteomics.yml.lock b/usegalaxy.cz/proteomics.yml.lock
index a0bdb37..86cb4db 100644
--- a/usegalaxy.cz/proteomics.yml.lock
+++ b/usegalaxy.cz/proteomics.yml.lock
@@ -59,6 +59,7 @@ tools:
 - name: maxquant
   owner: galaxyp
   revisions:
+  - 022e886e8f94
   - 837224ad1694
   - 8934bc76bb52
   - 9c52362ae7bb
@@ -395,6 +396,7 @@ tools:
 - name: metaquantome_stat
   owner: galaxyp
   revisions:
+  - ad0fb0956559
   - b648e45fd3cf
   - b9d453dca8d3
   tool_panel_section_id: proteomics
@@ -404,6 +406,7 @@ tools:
   revisions:
   - 35cc7ca0bdc7
   - a1daafbf5233
+  - e5ced3896e9c
   tool_panel_section_id: proteomics
   tool_panel_section_label: Proteomics
 - name: metaquantome_expand
@@ -417,6 +420,7 @@ tools:
 - name: metaquantome_db
   owner: galaxyp
   revisions:
+  - 491ee27f3e45
   - '860429737408'
   - e63db1aa82ee
   tool_panel_section_id: proteomics
diff --git a/usegalaxy.cz/quality_control.yml.lock b/usegalaxy.cz/quality_control.yml.lock
index dce54f8..366b5ca 100644
--- a/usegalaxy.cz/quality_control.yml.lock
+++ b/usegalaxy.cz/quality_control.yml.lock
@@ -24,6 +24,7 @@ tools:
   - e4574a4d09d8
   - e4dd4c0622f6
   - f7e2f1eb3a16
+  - fac2260bc88a
   tool_panel_section_id: quality_control
   tool_panel_section_label: Quality Control
 - name: fastq_info
diff --git a/usegalaxy.cz/rna_analysis.yml.lock b/usegalaxy.cz/rna_analysis.yml.lock
index f13e750..75e65d4 100644
--- a/usegalaxy.cz/rna_analysis.yml.lock
+++ b/usegalaxy.cz/rna_analysis.yml.lock
@@ -896,6 +896,7 @@ tools:
   - 765e685641ce
   - 7acb00fc980a
   - a2c1c52a7e47
+  - a9b4d7761b46
   tool_panel_section_id: rna_analysis
   tool_panel_section_label: RNA Analysis
 - name: arriba_get_filters
@@ -915,6 +916,7 @@ tools:
   - 3d61a698e5e1
   - 45c2ec061cf9
   - 6535dd4a4064
+  - e1ab5699a834
   - f6b8b38636a4
   tool_panel_section_id: rna_analysis
   tool_panel_section_label: RNA Analysis
diff --git a/usegalaxy.cz/single_cell.yml.lock b/usegalaxy.cz/single_cell.yml.lock
index 98581f4..c3e532a 100644
--- a/usegalaxy.cz/single_cell.yml.lock
+++ b/usegalaxy.cz/single_cell.yml.lock
@@ -44,6 +44,7 @@ tools:
   revisions:
   - 3d748954434b
   - 7e8c677a7b71
+  - 9ef202055d5c
   - be1fdce914c6
   - d1e49c3c0aa2
   - d9948b3dd270
@@ -248,6 +249,7 @@ tools:
   owner: iuc
   revisions:
   - 0bff0ee0683a
+  - 14ac9a11465e
   - 49776718ae90
   tool_panel_section_id: single_cell
   tool_panel_section_label: Single-cell
@@ -256,12 +258,14 @@ tools:
   revisions:
   - 2af7c5086a96
   - 2bfd55b87af3
+  - fe9bf1aa669e
   tool_panel_section_id: single_cell
   tool_panel_section_label: Single-cell
 - name: raceid_inspecttrajectory
   owner: iuc
   revisions:
   - 6e90c8adf84f
+  - 9606d2385547
   - a6821f856a1e
   tool_panel_section_id: single_cell
   tool_panel_section_label: Single-cell
diff --git a/usegalaxy.cz/text_manipulation.yml.lock b/usegalaxy.cz/text_manipulation.yml.lock
index f4b7254..8f5e5d0 100644
--- a/usegalaxy.cz/text_manipulation.yml.lock
+++ b/usegalaxy.cz/text_manipulation.yml.lock
@@ -75,6 +75,7 @@ tools:
   revisions:
   - 3284b72eef56
   - 8061668d0868
+  - 8a19efbd2178
   - b31219f26a8f
   tool_panel_section_id: text_manipulation
   tool_panel_section_label: Text Manipulation
@@ -288,6 +289,7 @@ tools:
 - name: wordcloud
   owner: bgruening
   revisions:
+  - 45c4cc885ddb
   - 6055ffae8903
   tool_panel_section_id: text_manipulation
   tool_panel_section_label: Text Manipulation
diff --git a/usegalaxy.cz/variant_calling.yml.lock b/usegalaxy.cz/variant_calling.yml.lock
index 01c6f9a..03150b4 100644
--- a/usegalaxy.cz/variant_calling.yml.lock
+++ b/usegalaxy.cz/variant_calling.yml.lock
@@ -15,6 +15,7 @@ tools:
   - 6f52ebc01098
   - 7021ed347f7e
   - 93cfe7df7f8a
+  - c218cc6bf765
   tool_panel_section_id: variant_calling
   tool_panel_section_label: Variant Calling
 - name: artic_guppyplex
@@ -24,6 +25,7 @@ tools:
   - 311d11c4a68b
   - 372def2f8fd6
   - c23737f9714f
+  - e92767bd4412
   tool_panel_section_id: variant_calling
   tool_panel_section_label: Variant Calling
 - name: manta
@@ -199,6 +201,7 @@ tools:
   revisions:
   - 16d22eee0fe3
   - 2c0ac05fe240
+  - 9c48485bf664
   tool_panel_section_id: variant_calling
   tool_panel_section_label: Variant Calling
 - name: cutesv