From f6fc505e9d8b1ea54e948708ac796d11d8997407 Mon Sep 17 00:00:00 2001 From: Alejandro Gonzales-Irribarren Date: Sat, 30 May 2026 01:37:13 +0200 Subject: [PATCH 1/5] Change MULLED_NAMESPACE to alejandrogzi --- .github/workflows/ci.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index 1edaa9f68..91c93802f 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -1,7 +1,7 @@ name: Build image on: [push, pull_request] env: - MULLED_NAMESPACE: biocontainers + MULLED_NAMESPACE: alejandrogzi MULLED_TOOL_UTIL_SOURCE: git+https://github.com/bgruening/galaxy.git@mulled_quay_enhancements#subdirectory=packages/tool_util jobs: build-and-test: From c2b3a640074591bbb7506655d7762d29a63a2292 Mon Sep 17 00:00:00 2001 From: Alejandro Gonzales-Irribarren Date: Sat, 30 May 2026 01:59:56 +0200 Subject: [PATCH 2/5] Add lastz=1.0.4,python=3.9 --- ...7a3113be58a40:9aba50fa239c64baa62d846cf1c2a959166bbfe2-0.tsv | 2 ++ 1 file changed, 2 insertions(+) create mode 100644 combinations/mulled-v2-ab598cfd8731d8707b79df8e1e97a3113be58a40:9aba50fa239c64baa62d846cf1c2a959166bbfe2-0.tsv diff --git a/combinations/mulled-v2-ab598cfd8731d8707b79df8e1e97a3113be58a40:9aba50fa239c64baa62d846cf1c2a959166bbfe2-0.tsv b/combinations/mulled-v2-ab598cfd8731d8707b79df8e1e97a3113be58a40:9aba50fa239c64baa62d846cf1c2a959166bbfe2-0.tsv new file mode 100644 index 000000000..ae3e9519d --- /dev/null +++ b/combinations/mulled-v2-ab598cfd8731d8707b79df8e1e97a3113be58a40:9aba50fa239c64baa62d846cf1c2a959166bbfe2-0.tsv @@ -0,0 +1,2 @@ +#targets base_image image_build +lastz=1.0.4,python=3.9 quay.io/bioconda/base-glibc-busybox-bash:latest 0 From 6b5000eaf2cec1ef18f9707afe9eb6d68b111dc2 Mon Sep 17 00:00:00 2001 From: Alejandro Gonzales-Irribarren Date: Sat, 30 May 2026 02:03:35 +0200 Subject: [PATCH 3/5] Add lastz and python versions to hash.tsv --- combinations/hash.tsv | 1 + 1 file changed, 1 insertion(+) diff --git a/combinations/hash.tsv b/combinations/hash.tsv index 2245801d3..d6cb5a62e 100644 --- a/combinations/hash.tsv +++ b/combinations/hash.tsv @@ -947,3 +947,4 @@ r-susier=0.14.2,r-data.table=1.17.8 samtools=1.21,star=2.7.3a gcta=1.94.1,tabix=1.11 manc_cojo=1.1.0,tabix=1.11 +lastz=1.0.4,python=3.9 From 33c6d7e347d1a0ef6db460731e3d355243025235 Mon Sep 17 00:00:00 2001 From: Alejandro Gonzales-Irribarren Date: Sat, 30 May 2026 02:10:37 +0200 Subject: [PATCH 4/5] Update ci.yaml --- .github/workflows/ci.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index 91c93802f..1edaa9f68 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -1,7 +1,7 @@ name: Build image on: [push, pull_request] env: - MULLED_NAMESPACE: alejandrogzi + MULLED_NAMESPACE: biocontainers MULLED_TOOL_UTIL_SOURCE: git+https://github.com/bgruening/galaxy.git@mulled_quay_enhancements#subdirectory=packages/tool_util jobs: build-and-test: From fde2d71d3bc6eca1b637b3bffe47a05428a9a511 Mon Sep 17 00:00:00 2001 From: Alejandro Gonzales-Irribarren Date: Sat, 30 May 2026 12:56:37 +0200 Subject: [PATCH 5/5] Delete lastz/python mulled --- ...7a3113be58a40:9aba50fa239c64baa62d846cf1c2a959166bbfe2-0.tsv | 2 -- 1 file changed, 2 deletions(-) delete mode 100644 combinations/mulled-v2-ab598cfd8731d8707b79df8e1e97a3113be58a40:9aba50fa239c64baa62d846cf1c2a959166bbfe2-0.tsv diff --git a/combinations/mulled-v2-ab598cfd8731d8707b79df8e1e97a3113be58a40:9aba50fa239c64baa62d846cf1c2a959166bbfe2-0.tsv b/combinations/mulled-v2-ab598cfd8731d8707b79df8e1e97a3113be58a40:9aba50fa239c64baa62d846cf1c2a959166bbfe2-0.tsv deleted file mode 100644 index ae3e9519d..000000000 --- a/combinations/mulled-v2-ab598cfd8731d8707b79df8e1e97a3113be58a40:9aba50fa239c64baa62d846cf1c2a959166bbfe2-0.tsv +++ /dev/null @@ -1,2 +0,0 @@ -#targets base_image image_build -lastz=1.0.4,python=3.9 quay.io/bioconda/base-glibc-busybox-bash:latest 0