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Translate Instructions from LIMS
LIMS

Subject Data
Session Instructions
Lab Information
Config API
Observability tools
Instrument Configuration Storage
Execute business logic
Hardware drivers
Interaction
UI or API
Export data & metadata
Generic Instrument/Infrastructure Architecture
Gather 
Observability
Logs/Metrics
Legend
Scientific Computing Infrastructure
Instrumentation Infrastructure
Acquisition Software
Adapter
Experimental Setup
Instrument Control Software Suite
System Monitoring
Experimental Setup 
(Computer(s) plus hardware)
Transfer Data/Metadata Off Instrument






Data Transfer Utility
Logging API
Ingest Instructions
Collect and Report Session Information
Analysis Infrastructure









Storage
Processing and Analysis
...
Rig management tools
(setup, deployment, updating)
Instrument SDK
- API
- Schemas
- Data Contract
Communicates using 
Instrument SDK
Communicates using 
Infrastructure SDK
Translate session info back to LIMS
  • Instruments are standalone
    • Can be shipped as a unit to different environments
    • No dependencies on infrastructure
    • Declares its own SDK to aid use and integration
  • Adapters translate between Instruments and Infrastructure
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